[Fri Aug 26 17:29:32 2016] >Input file: TMD3ZUJ8M1D.pdb >TM segments: 567-579_ 584-596_ 601-613 MAIDEN score = -6.1405 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L579 -P584 1.90009545676207 I572 -L604 1.19169128400149 K568 -L595 0.976843421768281 R574 -A587 0.88496138038818 L578 -P584 0.768250704668065 D603 -L608 0.65899248054269 L595 -L604 0.65855632051007 L579 -K586 0.594749005441821 L595 -W605 0.586221203081308 A594 -L604 0.54359458354399 K568 -K593 0.537166201239799 L579 -V611 0.525876677247589 I572 -K593 0.520976225700673 Y591 -L604 0.499400526617109 G575 -K588 0.488045187866429 E576 -A587 0.472699611531559 L585 -Y612 0.448127920913149 R574 -L579 0.447380895418579 P584 -V611 0.434469304291637 Y591 -L608 0.421485436142114 L595 -N601 0.400605643675196 L579 -K588 0.387655958737295 G575 -K586 0.384603286903111 Y591 -W605 0.350947993140309 L585 -V611 0.344421141793319 K568 -A602 0.342947148122641 E576 -K588 0.332367327045352 G575 -A609 0.323704517643725 R574 -K588 0.320955866342512 A587 -V611 0.319263704678374 Y591 -N607 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