[Mon Aug 29 17:31:37 2016] >Input file: TMD4ABX9M1G.pdb >TM segments: 41-80 MAIDEN score = -5.3495 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L61 -K76 0.871673975705164 V60 -K76 0.732107328982133 W74 -K79 0.56311184309435 L61 -W74 0.433685792764996 L61 -Y77 0.332403781506814 K69 -S80 0.319858776760216 G42 -G51 0.287208470979064 I53 -A58 0.275775766208899 G42 -L49 0.275590241104028 L61 -K79 0.261207047982253 A58 -K79 0.221897692517183 S63 -S80 0.219336660106157 V60 -F78 0.205805699289069 L62 -K76 0.202882176289213 L61 -N75 0.202463686960161 L66 -G71 0.187977821478505 L61 -K69 0.174229664932248 L65 -K76 0.172706157193961 L64 -N75 0.171007325919688 L64 -G71 0.164510953041129 R73 -K79 0.162925126664233 F52 -S59 0.157466455623418 S59 -L64 0.151197060931125 L62 -K79 0.147111116329366 S63 -Y77 0.145126158646995 Y50 -L57 0.139791412084916 L62 -K69 0.136738572750399 T47 -F54 0.135529518676075 S63 -W74 0.133110798732406 L68 -K76 0.127579051933643 L62 -S80 0.126325580652193 L49 -L57 0.123203240876817 G51 -L57 0.121679725732534 Y50 -Y55 0.119435616872952 G48 -L56 0.116199920511788 G51 -A58 0.115916765244427 S63 -L68 0.115575817862696 L64 -A70 0.113630068653642 S59 -F78 0.108332126826748 A41 -G51 0.104792846354585 S63 -K79 0.0977499185948578 I67 -K76 0.0921289265674599 S59 -Y77 0.0919586651619468 A58 -L64 0.0909393763045454 V60 -N75 0.0886096854242342 S63 -A70 0.078833493212934 A58 -S80 0.0755808385264418 L65 -R73 0.0746868162648778 K69 -N75 0.074552189849372 V60 -L66 0.0735855758645286 L61 -F78 0.0723882411831687 G71 -K76 0.0722872568095891 S63 -K69 0.0717948205264429 A70 -N75 0.0685455976066907 I67 -W74 0.0609646592796858 S59 -L65 0.0587417454458248 S63 -N75 0.0579879037702199 L57 -L62 0.056058777551494 Y50 -A58 0.0553762900315742 L64 -Y77 0.053916791216869 I53 -S59 0.0532828491479675 L57 -L64 0.0512987050228495 S59 -W74 0.050846535190993 A58 -L65 0.0482196009017493 S59 -I67 0.0446955188411486 R72 -F78 0.0403467561606794 I67 -N75 0.0397095321449985 L61 -R72 0.0392234429593588 L56 -S63 0.0382676883183333 L62 -R73 0.0373146037368928 S63 -G71 0.0358306603423082 R73 -S80 0.031159276847804 I43 -G51 0.0228646421121188 S59 -N75 0.0180853895595616 L49 -A58 0.0153368829369009 L44 -I53 0.00943255347699434 F54 -S59 0.00915103796779193 V60 -I67 0.00913016893212637 L61 -S80 0.00650241785641903 G42 -T47 0.00553431930395076 L56 -L62 0.00462467889887463 Y55 -V60 0.00291857049180511 F52 -L57 -0.000159087241634381 S59 -L68 -0.000806715402513081 L61 -L68 -0.0076057236900926 G45 -I53 -0.00834849787850467 G45 -Y50 -0.00968118032402143 S59 -L66 -0.0103669791332202 S63 -F78 -0.0119893247791054 G71 -Y77 -0.0122638616370377 S59 -K79 -0.0128120989437237 V60 -A70 -0.0149155559983984 L61 -G71 -0.0152779108632313 A41 -L49 -0.0157299170657321 G71 -S80 -0.0190159458202652 L62 -A70 -0.0196620186545244 L62 -F78 -0.0252760999172974 A70 -K79 -0.0277734239450642 A41 -G48 -0.0281731245111945 L68 -N75 -0.0317011075345873 V60 -G71 -0.0358355543948967 A58 -K76 -0.03819585219046 G42 -F52 -0.0388242048356524 I67 -R72 -0.0416871240924586 S63 -K76 -0.0428569058984449 K69 -Y77 -0.044050174130339 I67 -R73 -0.0447342056130537 R72 -S80 -0.0450829801878775 L62 -R72 -0.0462423676820931 S59 -S80 -0.0484419654971435 L66 -R72 -0.0508557137916922 G45 -F54 -0.0515044651171793 L61 -I67 -0.0572376780871049 L44 -Y50 -0.059492749007553 A70 -Y77 -0.0600537697005106 G42 -Y50 -0.0608211979223148 Y50 -L56 -0.0641249108742001 R72 -K79 -0.0656967292633617 G48 -Y55 -0.0666076203572192 L46 -F54 -0.0683561663713577 R73 -F78 -0.0685570267091018 W74 -S80 -0.0686453025197022 L46 -I53 -0.0742264492628695 I67 -S80 -0.0743939519142209 I43 -Y50 -0.0745727744045412 L62 -Y77 -0.0758812712277903 V60 -Y77 -0.080835272420348 I43 -F52 -0.0811662961157094 L64 -S80 -0.0812834440931063 L65 -R72 -0.0821128240796449 S63 -R72 -0.0886017008392195 A41 -T47 -0.0894684598076609 T47 -L56 -0.0920983201542145 S63 -R73 -0.0934462879199551 R72 -Y77 -0.0953073326647405 A70 -F78 -0.0959773292111845 A58 -Y77 -0.0983127820349619 L46 -F52 -0.10051673546093 V60 -L68 -0.104769184693783 L62 -I67 -0.110151835797443 G45 -F52 -0.111419430845916 L64 -R73 -0.112669152997588 A41 -Y50 -0.112985284470279 A70 -K76 -0.113775398334554 T47 -Y55 -0.116443086224645 G71 -K79 -0.117913448010078 L57 -Y77 -0.117950817033736 G48 -F54 -0.120087595416714 L64 -R72 -0.120879453887984 G45 -G51 -0.123822835257832 G42 -G48 -0.12784257591954 L57 -S63 -0.128278347080476 G71 -F78 -0.130220932461611 I53 -V60 -0.132160046043762 L65 -Y77 -0.133512164348661 L56 -L64 -0.133865260938469 L62 -N75 -0.134739508649417 L64 -W74 -0.1348825125477 L66 -W74 -0.13770905571277 F52 -A58 -0.138039287328005 V60 -L65 -0.139309850538471 L62 -G71 -0.140838668024519 L44 -G51 -0.141987601770274 V60 -K79 -0.143194593525494 V60 -R73 -0.145476385984162 L56 -L61 -0.145897332650093 L61 -L66 -0.148530430674027 L66 -K76 -0.151275461954484 L57 -K76 -0.153973588029782 S59 -K76 -0.155459946862044 L44 -F52 -0.157354776221866 V60 -S80 -0.161491791014983 L64 -K79 -0.169361238644476 L64 -K76 -0.172928295523457 L65 -N75 -0.174879287362347 L46 -Y55 -0.184926253743142 L62 -L68 -0.188610028295676 L49 -L56 -0.18877076024753 G48 -I53 -0.189181037849198 L68 -S80 -0.189516749099775 A70 -S80 -0.191353997863138 L64 -K69 -0.193245298684575 L65 -A70 -0.193383066344422 A58 -S63 -0.196574254053819 L68 -Y77 -0.202225927954174 K69 -K76 -0.205264680520106 L61 -A70 -0.206208101881113 A41 -L46 -0.210373000174225 T47 -I53 -0.21106854822672 L62 -W74 -0.222136392940429 L57 -K79 -0.223319344186043 I43 -G48 -0.234232669424097 L61 -R73 -0.239781362859193 L49 -Y55 -0.241743099500889 T47 -F52 -0.26164983734915 L49 -F54 -0.268709874260706 L68 -R73 -0.283132270829222 L65 -W74 -0.286294308956604 L68 -W74 -0.292558125452979 K69 -W74 -0.333996374104282 L65 -G71 -0.337537848714469 L46 -G51 -0.360212895420906 G51 -L56 -0.363255495154004 I43 -L49 -0.393357232363857 L44 -L49 -0.399683757425754 V60 -W74 -0.400900144619175 N75 -S80 -0.580108926879054