[Mon Aug 29 17:33:22 2016] >Input file: TMD4TG63M1G.pdb >TM segments: 447-454_ 503-514_ 518-525 MAIDEN score = -3.7624 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A451 -T506 0.499331679041751 A450 -T506 0.471773410717597 R503 -L508 0.432120915628705 M512 -L519 0.331970052791362 A511 -L519 0.292721164167685 R505 -A524 0.257641737530865 L453 -T506 0.236077386661421 Q504 -M512 0.225944452213551 N452 -R503 0.219746026722809 N452 -R510 0.200779938037505 A511 -A524 0.190949215020046 T506 -A524 0.175114315771793 N452 -L508 0.174334010665874 A450 -R503 0.161628462979328 G448 -A511 0.16079361259601 N452 -Q504 0.156379797461911 L513 -I520 0.140878482665111 A450 -V514 0.13875055658189 A450 -Q504 0.135491715207788 N452 -T506 0.1229281178093 A509 -A524 0.118127167166334 R503 -A511 0.109182443124221 S449 -A511 0.107926490816466 A450 -L508 0.107629059751517 R503 -A524 0.106202507475452 A507 -I520 0.098077870234575 L447 -A509 0.0976136871469497 N452 -A509 0.0947138930457359 S449 -A454 0.0931241250295667 V514 -I520 0.089932883913252 S449 -A507 0.0881520926753936 R510 -L521 0.0861034006748173 A507 -L519 0.0858554704473551 L508 -L525 0.0793591994771434 R503 -R510 0.0789462192283141 S449 -V514 0.0775481824602222 Q504 -L525 0.0751263031459608 Q504 -L513 0.0749075915808746 A507 -L521 0.0747434062735972 A509 -V518 0.0669751092787854 L447 -R510 0.0651221045145634 L508 -V518 0.0644636688074725 R505 -L525 0.0630124664496898 R505 -M512 0.0624660373806081 A450 -R510 0.0598608048366418 A451 -L513 0.0596956828211113 I520 -L525 0.0576746817022724 A511 -I520 0.0541617301984321 A507 -L525 0.0515079341019393 Q504 -A511 0.0474419524336148 G448 -A509 0.0407609340383681 R510 -L519 0.0406251464696585 R505 -R510 0.0398886308558506 L447 -M512 0.0376606921309963 L508 -D522 0.0372266755643174 A451 -M512 0.0341005269528876 A509 -L521 0.0325391956688057 L513 -V518 0.0314804755732547 A507 -D523 0.0266120710535926 V514 -L521 0.0230863030898623 A451 -L508 0.0171589827283682 L453 -R505 0.0144217110449425 A450 -A511 0.0118071946261844 T506 -L521 0.00499023309908175 T506 -V514 0.00264349545704823 G448 -R510 0.00118006886360744 Q504 -D523 -0.00069760457222845 A509 -I520 -0.00410181277191146 A507 -D522 -0.00449677024262085 A451 -Q504 -0.0066100542767944 L447 -A511 -0.00959630452063109 A511 -L525 -0.0114862297720553 L513 -L519 -0.0120956482559555 L453 -Q504 -0.0139966470916173 A509 -V514 -0.0172064702777499 A507 -V514 -0.0252082195397163 L508 -D523 -0.0316911511402478 A450 -M512 -0.0327698188276206 R510 -I520 -0.0330948210920665 A451 -A511 -0.0381686804108838 A450 -A509 -0.0388607636535241 A454 -T506 -0.0420784555941911 Q504 -A509 -0.046473138222471 G448 -T506 -0.0474195535980577 S449 -R505 -0.0477359483020135 A509 -L519 -0.0512263420498495 G448 -M512 -0.0514272660731301 Q504 -A524 -0.0564518601912014 Q504 -L521 -0.0591408807772678 M512 -A524 -0.061208112157898 S449 -M512 -0.0685890722301323 R505 -L513 -0.0688640292360736 S449 -L508 -0.0693672544819117 M512 -L521 -0.0732891646880112 L453 -A507 -0.0800957882109348 L508 -I520 -0.0804879204393705 G448 -V514 -0.0832382744883571 A511 -D522 -0.0842752857509411 S449 -R510 -0.0865041924079658 A451 -R503 -0.0891189817940745 Q504 -D522 -0.0905222917621133 R503 -L525 -0.0910204301724491 N452 -A507 -0.0943735910631818 S449 -R503 -0.10052157652261 S449 -T506 -0.104927861186851 T506 -L525 -0.104946729089616 L519 -A524 -0.107617701741858 R510 -A524 -0.10926633348607 G448 -L513 -0.113774404261342 L447 -L513 -0.118107216951581 A507 -M512 -0.122998337893875 Q504 -R510 -0.136315125008475 R505 -L521 -0.142347731932696 A511 -V518 -0.145215586571553 A511 -D523 -0.165561035719238 A454 -R503 -0.170030405396283 R503 -A509 -0.170451236638916 A451 -A507 -0.172278919040177 L508 -A524 -0.172989552842573 V514 -L519 -0.178743982047983 A450 -A507 -0.181033085650047 A451 -A509 -0.181273928518222 R505 -A511 -0.191921671291081 L508 -L519 -0.195071903705886 S449 -A509 -0.200461699554497 L453 -R503 -0.228566923095598 R510 -V518 -0.238910105212891 A451 -R505 -0.239208748040422 A451 -R510 -0.243301920496675 A450 -R505 -0.246174548589253 A507 -A524 -0.24831132632232 T506 -L513 -0.249359601022746 L508 -V514 -0.261754727436286 T506 -M512 -0.273599225033968 N452 -R505 -0.276508968699062 A450 -L513 -0.28098215879252 R503 -M512 -0.290495835698547 A511 -L521 -0.298713654457268 A507 -L513 -0.302636912277894 M512 -I520 -0.32530008866828 S449 -L513 -0.334964502752333 T506 -A511 -0.342902850759549 M512 -V518 -0.363803091392096 L508 -L513 -0.364004432487118 L447 -V514 -0.37703173173754 L508 -L521 -0.40422426363404