[Mon Aug 29 17:38:20 2016]
>Input file: TMD5AER1M3G.pdb
>TM segments:  393-422_ 527-558

MAIDEN score = -5.4809

Below is the ranking list of the residue pairs and their related pseudo-energy
(the lower, the better). This includes inter-chain residue pairs.

The maximum (least favorable) pairwise energy value has been set to 10.
See the MAIDEN software article:
Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161.


-----------		----------------
Calpha pair		Empirical energy
-----------		----------------
I401 -V407 		1.00921698718708
V412 -R417 		0.89291216294718
Y405 -V412 		0.805410841792151
I401 -D418 		0.750816201266461
K394 -I546 		0.734922032119542
V545 -D557 		0.727275145905226
L400 -D406 		0.663806576909515
M534 -A556 		0.635921908375
A547 -I553 		0.622820967104458
F404 -A413 		0.60286258987172
F544 -D557 		0.529867028757286
A547 -T552 		0.506239698618641
L400 -V407 		0.498334210386823
F404 -D418 		0.491313786400006
Y405 -S411 		0.455974799496415
M534 -R541 		0.452324829971679
I401 -G410 		0.446678849091267
E535 -T552 		0.446062064715203
M534 -A539 		0.439564801878639
M534 -S543 		0.435270903670176
Q531 -T552 		0.408568956672399
F404 -V412 		0.386686678090227
N402 -R420 		0.380945863012004
I397 -N402 		0.366573239875351
Q531 -N555 		0.362328156541566
K529 -M534 		0.361153202231099
Y422 -V545 		0.356738275247776
M398 -V412 		0.336056583246705
D418 -R541 		0.331061363033448
E421 -F544 		0.315801978278331
T395 -I546 		0.312762770239309
T552 -E558 		0.311542345954086
R549 -L554 		0.306898374327851
N402 -I419 		0.306011797187431
N399 -F404 		0.294392334677638
V545 -I553 		0.287998020540238
S411 -G416 		0.28044245388381
Q531 -A536 		0.270697590105193
K532 -S543 		0.264528133034726
H548 -L554 		0.262152314202486
Y405 -D415 		0.256768006145867
E535 -D557 		0.255128740027482
A533 -I538 		0.252450968346732
D406 -D415 		0.250818975850015
N399 -G410 		0.226183532502054
F404 -G416 		0.225047703706036
K532 -R541 		0.21960403523087
K529 -E535 		0.21560955074353
T395 -H548 		0.207959546764809
N402 -S411 		0.203189251897993
A547 -D557 		0.20305970364151
I397 -V545 		0.201982979056731
G393 -I546 		0.201693801271452
K532 -I538 		0.187325937503309
A536 -S543 		0.185938898569904
K529 -N555 		0.18531493631119
F544 -N555 		0.184490850920339
Q531 -E558 		0.181760131546555
K532 -L554 		0.178508564366614
D415 -R541 		0.178223395404247
D418 -V545 		0.173443647160529
M398 -S411 		0.172972400072979
I401 -T542 		0.172540634269177
D406 -R417 		0.171024245847959
G409 -G416 		0.170470433513538
I546 -A556 		0.170426775453135
E535 -A556 		0.169898160026785
T395 -F544 		0.166380950584085
I401 -D406 		0.165942694947829
E527 -H548 		0.164672647543687
V545 -E558 		0.160871565016593
Y405 -D418 		0.15764580662191
R403 -D415 		0.156890598212944
M534 -I546 		0.15329273578124
E527 -A547 		0.153248186462542
R417 -S543 		0.15177801973153
K532 -G540 		0.151272065693772
I530 -A547 		0.149719770555739
R403 -S411 		0.149675609800912
N408 -D415 		0.149205260326655
N399 -N408 		0.149045839660252
E527 -E535 		0.143913206704861
K551 -E558 		0.143359039407083
I401 -I546 		0.142681678839304
V407 -D418 		0.141303654867657
Y422 -I546 		0.141194287163135
D418 -M534 		0.141001691759705
F404 -G409 		0.139340812889742
H548 -A556 		0.139218651052311
A528 -R549 		0.138308868415034
K532 -T542 		0.137878177784452
R541 -A556 		0.13617618617416
R417 -F544 		0.135910053112631
L400 -Y422 		0.135590405867582
N399 -Y405 		0.133120517427098
I546 -K551 		0.132785589857697
L400 -I546 		0.131625150131001
D406 -A413 		0.130706820870519
E421 -I546 		0.129661892128711
K532 -I553 		0.128419198294783
N399 -D418 		0.127437769748786
Q531 -A547 		0.127433584142919
A413 -R420 		0.127141330083869
V545 -L554 		0.126306454265526
Y405 -A413 		0.125514110696134
S543 -I553 		0.122049029299374
V545 -L550 		0.121256480173591
A536 -D557 		0.121167260133715
I538 -A556 		0.11999088707169
V407 -A413 		0.119466934270554
T396 -G410 		0.117527549478504
R403 -F414 		0.117281666611094
N402 -S543 		0.116940594902676
Q531 -L550 		0.115334183755931
N402 -N408 		0.112657302096848
R403 -I419 		0.109298349898478
Q531 -T542 		0.10848440584985
Q531 -F544 		0.108205410771334
A533 -N555 		0.107450508053739
T395 -R403 		0.106581715790553
K394 -H548 		0.104310816219749
A533 -A539 		0.101980334632401
F404 -F414 		0.100285260962072
G540 -A556 		0.0984860110667315
G393 -V407 		0.0979435247467411
A536 -E558 		0.0978836588907734
A539 -A556 		0.0977792808074707
T395 -R420 		0.0959749893608852
R403 -R417 		0.0956990707797299
I530 -A536 		0.0940596866492127
K394 -D406 		0.0914683159705726
G540 -E558 		0.0913702319625074
G416 -G540 		0.0912240313513295
Q531 -R541 		0.091103480014437
V412 -I419 		0.0901711432838965
S543 -T552 		0.0900477204143271
I530 -A539 		0.0888625203177575
T396 -F544 		0.0884991168587872
I530 -A556 		0.0883523380210187
T395 -Y405 		0.0874092531287419
K532 -F544 		0.0864796140261124
V407 -G416 		0.085953429826477
A536 -T552 		0.0841441301614907
V545 -K551 		0.0813268124723443
N399 -I546 		0.0790265200663285
K529 -I537 		0.0783312985528797
I397 -D406 		0.07773602900853
G393 -V545 		0.0769998758522719
T396 -Y422 		0.0754606303292045
I401 -Y422 		0.0742288593025795
A528 -L554 		0.0708832270195972
L550 -E558 		0.0706915882497161
E527 -L554 		0.0702301553762292
K529 -T552 		0.0692128459599464
I530 -L550 		0.0672582451818329
A536 -L554 		0.0655800285164061
A539 -F544 		0.0653024722526321
I530 -L554 		0.0640350798503202
N402 -G416 		0.0635627798739673
I537 -T542 		0.0633873497922819
K532 -K551 		0.0630902940865101
G416 -T542 		0.0628531800831564
Q531 -V545 		0.0623693282891417
K532 -A556 		0.0617790463139904
R417 -A539 		0.0612284053589895
A547 -N555 		0.0611581065253293
E527 -N555 		0.060747433226827
R420 -T542 		0.0596945233261094
Q531 -G540 		0.0591128107623673
R403 -N408 		0.0583537337507263
N402 -T542 		0.0573105798441942
E535 -G540 		0.0568880341529648
M398 -A547 		0.0567805111134967
L400 -G409 		0.0550558105336014
N399 -A413 		0.0541721846736793
G416 -S543 		0.0534802340282162
E527 -L550 		0.0534482797822862
I397 -G410 		0.0533365921575741
T396 -R420 		0.0532073629982965
E421 -M534 		0.0530986274535636
Q531 -A539 		0.0513056443232617
T395 -I419 		0.0485374369959564
R549 -A556 		0.0481319228482935
A528 -A539 		0.0464239842643059
M398 -T542 		0.044938134294625
A533 -L554 		0.0441867138956944
F404 -Y422 		0.0414014750515932
N399 -F544 		0.039349077802411
G410 -D418 		0.0385376757286267
I401 -S411 		0.0380743193769568
M398 -F544 		0.0372619062618371
Y405 -R420 		0.0371981230551706
V545 -N555 		0.0367568393883935
Y405 -G416 		0.0366122911872077
N399 -S411 		0.036243586051933
E535 -F544 		0.0356047312681851
D415 -T542 		0.0344690991441018
R417 -R541 		0.0343861373811758
L400 -S411 		0.0336161725320361
K532 -D557 		0.0332497952942501
E535 -L554 		0.0316286112999373
K529 -A539 		0.03096978380393
L550 -N555 		0.0293206616868069
R403 -E421 		0.0288297137417044
G393 -H548 		0.0277106894286869
T396 -V545 		0.0274138459565956
N402 -F414 		0.0270646038899969
D406 -D418 		0.0268547486503352
L400 -R417 		0.0263961488157358
N408 -G416 		0.0248497222451221
Y405 -F414 		0.0247721263825662
N402 -E421 		0.0243408539696306
E527 -M534 		0.0234290498278035
I537 -S543 		0.0227874060568229
L400 -A413 		0.0222064328932472
S543 -N555 		0.0218390638749739
E535 -V545 		0.0207347405525945
R549 -D557 		0.0205869702118588
F404 -S411 		0.0192477909175672
A539 -N555 		0.0189574950602838
I530 -S543 		0.0184016721912617
M398 -G410 		0.0172495612652721
A533 -F544 		0.0169719995043103
R403 -G416 		0.0167638818800482
A533 -T542 		0.0166648472797304
G393 -A547 		0.0150976409293466
E421 -V545 		0.0145216626738996
L400 -F544 		0.0132952980009593
I530 -K551 		0.0126046461539904
N402 -G410 		0.0125081852060243
G410 -R417 		0.0118508724492316
M534 -E558 		0.0115984824883668
N399 -R417 		0.0100955523459088
G416 -R541 		0.00977101833818629
R403 -G410 		0.00732621465136779
I397 -N408 		0.00715542488391918
R403 -R420 		0.00618595007621642
F544 -T552 		0.00546649083020401
Q531 -I553 		0.00500209313796418
N399 -D406 		0.00469213528740875
G409 -D415 		0.00449917497791125
Y422 -S543 		0.00442698381772466
G409 -D418 		0.00366858549786048
I537 -A556 		0.00295873773976717
A528 -I537 		0.00293122764732691
A528 -L550 		0.00290990662737656
A528 -A547 		0.00245803686380341
E535 -K551 		0.00243875936676607
N399 -A547 		0.00114322888869367
I546 -E558 		0.00111668571341195
K532 -E558 		0.00102745731524312
Q531 -I538 		0.000284283307543376
N408 -A413 		-0.00160429599170936
K394 -V407 		-0.00222965297076172
T395 -V407 		-0.00235707241834238
E535 -T542 		-0.00295795996206971
R417 -Y422 		-0.00311019946978952
I419 -M534 		-0.00378074972112685
K529 -A536 		-0.0042970718372104
M534 -T542 		-0.00543203407069281
M398 -D418 		-0.0063482753990014
I397 -R420 		-0.00700478905068436
G393 -I401 		-0.00808350962572135
I401 -F414 		-0.0101503917450696
F404 -R420 		-0.011332651772059
G410 -F544 		-0.0114094680200059
I530 -T542 		-0.0135438529362091
F544 -L554 		-0.0138393029398203
T542 -E558 		-0.0144329231122704
A533 -I553 		-0.0147731739129558
A528 -I553 		-0.0149192353080947
A413 -T542 		-0.0154949917567331
N399 -S543 		-0.0155640310555787
I530 -R541 		-0.0156761330800417
I401 -S543 		-0.0159248070404117
R420 -I530 		-0.0178040006526592
T396 -N402 		-0.0179120210453738
E527 -R549 		-0.0181642015159501
K394 -I553 		-0.0198675637280026
E527 -K532 		-0.0198884146523248
T396 -F404 		-0.0201231129368535
R420 -I546 		-0.020453379199167
N402 -I546 		-0.0212589901177529
N399 -V545 		-0.0220783420652877
I537 -N555 		-0.022253285387055
L400 -R420 		-0.0222842670661532
I530 -I537 		-0.022609991749162
T396 -N408 		-0.0227658318079236
T395 -N402 		-0.0235214291083063
T542 -I553 		-0.0243143577002201
M534 -G540 		-0.0254662012500448
S411 -T542 		-0.026661607272056
N399 -E421 		-0.0269022153280183
A413 -I419 		-0.0269331928312635
E527 -K551 		-0.0270346610010295
A533 -V545 		-0.0272922505852327
Q531 -I546 		-0.0276384871320241
N402 -F544 		-0.0280872492103414
I419 -R541 		-0.0287825367564016
A533 -T552 		-0.0290890556028076
R420 -S543 		-0.0291619664790033
I546 -D557 		-0.0295288107778249
S411 -D418 		-0.0304180131154976
A547 -E558 		-0.0313222248150884
I546 -I553 		-0.0315199581252616
K529 -I538 		-0.0327297771504962
D406 -S411 		-0.033273499992002
M398 -R403 		-0.0334288766715178
R417 -T542 		-0.0349498957214296
E421 -A547 		-0.0356722124444985
I530 -F544 		-0.0357241073317471
Y405 -R417 		-0.0357306139837412
R541 -D557 		-0.0361854707694858
T396 -Y405 		-0.0368176372128538
E527 -A536 		-0.0373674918282623
I530 -G540 		-0.0382366696158201
T396 -A547 		-0.0403208422897675
I530 -R549 		-0.0409215023177985
T395 -S543 		-0.0413385224551606
M398 -Y422 		-0.0421990836710547
A413 -D418 		-0.0423019226930101
A539 -V545 		-0.0430669634991103
R420 -R541 		-0.0431103835056118
G409 -R417 		-0.043684733060612
E535 -R541 		-0.0455175605529803
D418 -G540 		-0.0468029172321978
I546 -N555 		-0.0468761918110068
Q531 -D557 		-0.0470601975899899
I530 -V545 		-0.0472504880923292
K532 -A539 		-0.0476242419499844
I419 -G540 		-0.0479517931435285
K532 -T552 		-0.0480611510588487
L400 -D418 		-0.0493151936964487
T542 -N555 		-0.0493853454189042
I530 -D557 		-0.0504972230412069
E421 -I530 		-0.0516227689099722
G393 -F544 		-0.0526594140229433
K394 -F544 		-0.0530772225119058
M398 -A413 		-0.0538054143933095
S543 -E558 		-0.053983536698198
F404 -I419 		-0.0559906627727358
M534 -A547 		-0.0563107295766105
I537 -D557 		-0.057969930762708
I401 -D415 		-0.0591708002801496
K394 -N399 		-0.0592136689293175
Y422 -F544 		-0.0594361852674035
S543 -L554 		-0.0596219253090739
F414 -I419 		-0.0598949607458161
K394 -Y405 		-0.0610583141026462
E527 -V545 		-0.0624181700541548
I397 -I546 		-0.0627735659800059
S411 -R417 		-0.0629136634284277
K394 -S543 		-0.0637916611471931
M398 -G416 		-0.0640624880712384
K529 -A556 		-0.0658860510607013
R403 -Y422 		-0.0665037691891812
N402 -V545 		-0.0676921408914626
Q531 -R549 		-0.0680811262349929
I397 -Y422 		-0.0682457016255358
S543 -D557 		-0.0682812829073414
F404 -D415 		-0.0683606299596231
R541 -E558 		-0.0683941005905071
I397 -S543 		-0.0696642898692965
N399 -V412 		-0.0743628216529504
T395 -D418 		-0.0747074950088686
M398 -D406 		-0.0753140350055546
A533 -E558 		-0.075408497862623
T552 -D557 		-0.0758721861195424
M398 -S543 		-0.0764873454674302
A539 -E558 		-0.0774992617096348
A536 -I553 		-0.0785105619350164
G410 -I419 		-0.0785353656808234
M398 -R417 		-0.0794406657551709
G540 -D557 		-0.0798999387043944
F404 -G410 		-0.0804241710856592
K394 -N402 		-0.0813593310644345
K529 -I553 		-0.0828095023625135
I397 -V407 		-0.0838215969609131
A533 -D557 		-0.0841871613392847
I397 -D418 		-0.0848286422942046
L400 -V545 		-0.0858929106957742
M534 -I553 		-0.0862255579130702
I538 -S543 		-0.0870171746218865
T542 -A556 		-0.0873164603476342
L400 -G416 		-0.0873293940997968
A536 -N555 		-0.087496702673945
A536 -T542 		-0.088406950268707
G416 -F544 		-0.0884481404838562
A533 -S543 		-0.0888039537862779
I397 -Y405 		-0.0889150078948191
R403 -G409 		-0.0893075345082535
D418 -S543 		-0.0895696298284827
I397 -S411 		-0.0897075214714854
G410 -G416 		-0.0907856322514409
T396 -I401 		-0.0915295921803434
I546 -L554 		-0.0924911877414856
I530 -I553 		-0.0931061859501501
E421 -S543 		-0.0931442757568433
Q531 -I537 		-0.0933501853313201
K394 -L400 		-0.0934787907941317
E527 -A533 		-0.0948067829266055
T395 -Y422 		-0.0954976621568608
G393 -N399 		-0.0972703721576349
K551 -A556 		-0.0988537176827506
I397 -F404 		-0.101488034075178
I397 -F544 		-0.102595322202013
I530 -T552 		-0.103002740584136
M534 -K551 		-0.103090486592652
M398 -Y405 		-0.103454977399686
M534 -T552 		-0.106794935200695
E535 -E558 		-0.107299899486452
T396 -D418 		-0.109567621299867
G393 -D406 		-0.111221717416933
S411 -I419 		-0.111761966401368
A547 -A556 		-0.112152607569653
K529 -K551 		-0.112177803984779
M398 -E421 		-0.113167777572369
R403 -A413 		-0.113415661181834
M398 -N408 		-0.113755353138506
D418 -T542 		-0.114318714669247
G409 -F414 		-0.115510734257274
M534 -L554 		-0.11627849886291
I419 -A539 		-0.116569798962081
F544 -L550 		-0.117412250729381
I397 -G409 		-0.118775840213684
E527 -I546 		-0.121392996163717
D406 -G416 		-0.121747897080175
A539 -D557 		-0.124752833067398
K532 -N555 		-0.124777520747678
T396 -I546 		-0.127017232851253
V412 -D418 		-0.127031653760925
G410 -D415 		-0.127723774020468
K394 -R403 		-0.130932564932964
E527 -I537 		-0.131029357139762
E535 -S543 		-0.132799550058206
R403 -F544 		-0.133975424225357
T395 -D406 		-0.134649695612317
D406 -F414 		-0.135345229104431
T395 -F404 		-0.135449327372286
T395 -A547 		-0.138799645241073
T396 -R403 		-0.139270360743976
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