[Mon Aug 29 17:46:35 2016] >Input file: TMD5T6Q6M4G.pdb >TM segments: 326-344_ 613-622_ 628-643_ 723-733_ 830-838 MAIDEN score = 26.0810 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I613 -L641 10 S618 -F637 10 V617 -T638 1.35376776154936 I613 -L640 1.22208949300243 T726 -L835 1.15382469200983 T616 -P639 1.1034068299482 F619 -I636 0.961357651217588 A633 -E729 0.948015376549535 F725 -L835 0.808748273044959 F727 -L835 0.79115525445057 H615 -L641 0.780163254799138 T616 -F637 0.736564172696015 H615 -P639 0.679624198989393 F728 -I833 0.661630735806108 A329 -V617 0.647232793797298 V617 -F637 0.643578655687772 H615 -L640 0.632574589359998 F619 -F637 0.630660834656384 Y330 -L640 0.626700005712346 V724 -L835 0.60550352218149 F622 -S630 0.579558985912059 F725 -D838 0.515564667081748 T620 -A633 0.506015719776888 F725 -D834 0.479588343302743 Y330 -Q337 0.474657664925224 A614 -P639 0.465072778473307 A329 -H615 0.452783206583399 T616 -T638 0.451873863655666 P332 -Q337 0.43684630905525 T620 -A635 0.373406682315141 A329 -L640 0.364430399602364 T726 -D834 0.358927614403174 N331 -P639 0.33603780683562 G621 -A633 0.335796707951561 E729 -Q836 0.328603169206091 P332 -P639 0.320302397923097 F725 -G837 0.317895832125578 F727 -I833 0.307214169633732 A329 -S618 0.275799722830176 D327 -V617 0.27547671147753 A614 -L641 0.274849844630329 G634 -N730 0.270138369880337 F622 -S631 0.268591657082617 F622 -N632 0.257233545434047 G621 -F637 0.257004847611585 A329 -S642 0.250926827983392 Y330 -S642 0.24826419804816 Q337 -F643 0.240269046515952 I613 -P639 0.239027301699913 F725 -Q836 0.210458154217282 T620 -S631 0.208295064010106 T726 -I833 0.20247639293308 H615 -T638 0.195192244546366 S618 -A633 0.193213503037017 A633 -T726 0.191668740923177 Y330 -Q338 0.190757071467377 S723 -Q836 0.188843146655372 M328 -S618 0.188130281362905 F728 -D834 0.185641948776416 N331 -F643 0.184238135626255 F619 -T628 0.181007080955483 T628 -A633 0.178806985428805 Y330 -S618 0.177435726226378 M328 -L641 0.175473871308864 T726 -T732 0.172929591256646 T616 -L640 0.169696045480215 T726 -D838 0.161285662237827 T333 -D341 0.160290985796079 N730 -L835 0.155367196514336 N629 -D834 0.153841626360518 P332 -L640 0.153189306283598 N331 -Q337 0.14237187966275 G634 -T726 0.139843437692042 V617 -P639 0.137759906134158 T616 -S642 0.13655014167286 N331 -A614 0.130230824818405 S630 -S731 0.127021692518987 T620 -N629 0.124894158466939 S618 -N632 0.1239887117172 Q338 -S642 0.11937930055134 M328 -S642 0.119330388556808 S618 -S631 0.118685837500223 S731 -A832 0.118629036638655 S630 -F637 0.115754240853686 S618 -L640 0.114691025871078 G634 -F725 0.113175946664381 A633 -P733 0.113100910952917 L334 -L640 0.108648680517221 V724 -G837 0.108290431801187 M328 -P639 0.105639880735757 F727 -A832 0.103151275863839 T628 -A635 0.101592189565798 F727 -G837 0.100879526291398 T726 -Q836 0.0990573032987894 T628 -E729 0.0963980922284473 S339 -F643 0.0962641467999159 A635 -E729 0.0945091260349464 A329 -L334 0.092834363551078 F728 -Q836 0.0923248780428922 G621 -E729 0.0921709503446078 M328 -T638 0.0915840407192457 N629 -A635 0.0913904972937434 M328 -T616 0.0884253669800987 T628 -F728 0.0859481977444601 I613 -S642 0.0849290156110918 F728 -G837 0.0839419523232428 S630 -T732 0.083718658804162 G621 -A635 0.0833239363834597 G621 -F728 0.0815837267005466 G634 -Q836 0.0800548130011027 L334 -S642 0.0792015644548778 S630 -A635 0.0767650233192061 N632 -N730 0.0733934901160089 N632 -F637 0.0724930727960924 F622 -N629 0.0690987957215485 I613 -S618 0.0669268797161224 A633 -F725 0.0640482408490644 A329 -F637 0.0636622705666055 T620 -S630 0.0589063895848008 P332 -F643 0.05779785912877 S630 -I636 0.056937356813183 N331 -S339 0.0559041379339407 Y330 -F643 0.0548871229656402 G634 -T732 0.0540780467587245 Y326 -N331 0.053596970523945 M328 -L334 0.0531054001411517 G634 -V724 0.0517703952204522 S723 -D834 0.0503645366162419 S631 -S731 0.0499110725952798 A614 -L640 0.0496813014887412 S630 -Q836 0.0487021720219341 M328 -F335 0.0476013516237498 Q338 -V343 0.047533214983118 V617 -G634 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