[Fri Aug 26 18:01:04 2016] >Input file: TMD6RAA6M1D.pdb >TM segments: 8-67 MAIDEN score = -4.7641 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Y36 -F41 0.944244698803824 V35 -F41 0.736436509945981 D24 -L29 0.616749993169096 M18 -A52 0.595315464540769 F17 -A58 0.56956337643125 N21 -A63 0.547836698652489 V15 -A58 0.530308969071427 P44 -E50 0.485585955416963 F17 -F54 0.458205168969693 K22 -N62 0.433180017212898 T20 -A61 0.41776689385327 K22 -M27 0.401522852835887 D24 -A63 0.398994944774389 T25 -A63 0.394007887542935 A12 -A58 0.378492065928787 M18 -H49 0.340757697601543 Q10 -V15 0.332646747763385 K22 -S30 0.329787065799996 V35 -L43 0.300402419021728 K22 -H49 0.293721616734245 M18 -N62 0.285942443943801 Y36 -V42 0.281508080895247 A26 -L32 0.2785229791165 M18 -Q56 0.275648493291706 V15 -T20 0.271998575863946 M19 -R57 0.265653437083198 T25 -P44 0.258632734477136 V35 -L40 0.256222805365994 T20 -W28 0.240812706397824 T34 -L43 0.237929940443797 M18 -R57 0.236610129510117 S30 -Y36 0.23187549912419 L29 -P44 0.229983257539121 P44 -H49 0.229089566245117 F17 -E50 0.220726995319932 R31 -Y36 0.212952914508782 D24 -A61 0.210937278353339 S38 -P44 0.199600015807009 G13 -Q56 0.194249231063502 A26 -R31 0.182983168882417 Q16 -R57 0.182672004282606 K22 -L64 0.181175683550406 A26 -T34 0.169462816292882 S30 -P44 0.167544586698859 A14 -F54 0.165057762574595 K22 -L60 0.155196198283336 Q16 -N21 0.154681049936508 R31 -S38 0.151182915694923 Q16 -A58 0.146630101600663 T25 -L64 0.144910582539771 Q16 -S53 0.144899798954607 S30 -V35 0.143480434044744 K22 -L32 0.138356335225854 A26 -V35 0.137858553783872 Q10 -F17 0.133820858463355 Q56 -A61 0.133690371591867 L29 -Y36 0.133532022138972 M19 -G47 0.132339576209658 N21 -S53 0.127500103463377 K22 -G47 0.125534251323803 A26 -N62 0.125269293308024 V35 -V42 0.125010318751579 L23 -L59 0.119573290079969 M27 -L60 0.117473325904876 A39 -P44 0.117331491110198 V15 -D24 0.11682990686201 M19 -N62 0.116630069072841 M19 -A52 0.116600664896681 Y55 -L60 0.116193755495349 F33 -F41 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