[Fri Aug 26 18:01:26 2016] >Input file: TMD6RAQ9M1D.pdb >TM segments: 54-72_ 75-92 MAIDEN score = -12.3349 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F77 -V82 0.983747689902008 D61 -C66 0.614279423433714 A76 -V82 0.516136171093155 V81 -R86 0.441301498816333 A75 -V81 0.438774419108331 P63 -Q70 0.359598555400968 M72 -R86 0.288225072957794 V71 -V81 0.25329036820218 Q70 -F77 0.238014060423172 F68 -L85 0.228997950648266 F68 -Q89 0.212312411146005 S69 -V81 0.21228114799653 Q70 -A75 0.196324991852202 L85 -P92 0.184073721517364 S65 -P92 0.180803543565896 D60 -R86 0.17829612938259 V67 -V82 0.172207193217309 S69 -F77 0.157835924924848 Y54 -G59 0.154336477696449 D61 -P92 0.15270725444355 A76 -R86 0.146777295336872 S69 -V82 0.136634499829909 F77 -R86 0.134349764244445 A76 -V81 0.132365453701338 A64 -V81 0.124346644433956 S69 -A83 0.122994821103804 C66 -V84 0.119145931319425 Q70 -L78 0.11617923847295 S65 -V84 0.11448121543625 D61 -F68 0.103347195162076 F87 -P92 0.103178427595384 D61 -K91 0.102181776007163 D60 -V84 0.0963746116623918 A75 -L85 0.0913006719186638 V67 -L85 0.0899899071334609 S65 -V81 0.0856444262118687 A64 -M72 0.0822509364261699 C66 -A75 0.0812389535904821 S69 -V84 0.0784747122255256 M72 -A83 0.0779866134647548 A58 -A64 0.0745901081595433 V67 -I88 0.0740683806139053 C66 -V81 0.0735772948727984 Q70 -V82 0.0721180729000439 Q70 -V84 0.0706994368998089 Q70 -L80 0.0692717846806046 V71 -A79 0.0666501903110692 V81 -Q89 0.0662691150390202 Q70 -L85 0.0662433045242636 A64 -A75 0.0650664176807454 S69 -I88 0.0578802269096506 S65 -F87 0.0556884184884687 P63 -L85 0.053630744585786 A75 -A83 0.0529016613887006 V71 -R86 0.0528979587753015 A58 -P92 0.0516969908540919 D61 -S69 0.0505965397892608 V67 -L80 0.0503206815637949 D60 -S69 0.0486251636314742 G59 -K91 0.0484655837772481 G59 -I88 0.0464638494505372 A58 -I88 0.043928675949771 F68 -A83 0.0412482024765 M72 -I88 0.0396025525712549 A64 -V82 0.0382168061062886 A64 -L85 0.0362319791336088 F68 -L78 0.0355680732203312 A58 -P63 0.0343745708321288 S69 -Q89 0.0298345376966922 V67 -A76 0.0296595413122835 I57 -P63 0.0290110251473876 A76 -F87 0.025599797859762 G59 -Q89 0.0250668698485406 R86 -P92 0.0250564141918892 D60 -F68 0.0247401430701588 M72 -A79 0.0247278522256069 P63 -V71 0.020489667656876 V67 -A83 0.0179312192202072 I57 -A64 0.0135978436065187 I57 -P92 0.0117313565439416 C66 -L85 0.0116874261231565 G59 -F87 0.00999908764674196 G59 -L90 0.00921958497217013 A64 -A83 0.00873021690212816 A75 -V84 0.00825841817740269 A83 -P92 0.00726877469999643 M72 -F87 0.0046017153266078 V84 -P92 0.00436385415185492 D61 -Q70 -0.00280496682596532 F68 -R86 -0.00358867229565385 A64 -V84 -0.0078241652079738 S56 -D61 -0.00782888964513173 D60 -I88 -0.00805423535302818 D60 -L85 -0.0116150613259318 S65 -Q89 -0.0140647847161106 F68 -A76 -0.0146621694274169 V71 -I88 -0.0178546096902537 F68 -L80 -0.0180868732849557 P63 -M72 -0.0197894261050648 S65 -A75 -0.020968753099611 M72 -V84 -0.0250509029861561 D60 -Q89 -0.0284332004186398 V71 -A83 -0.0284782592865112 P62 -Q70 -0.031935185774759 C66 -A76 -0.0336783356570603 A76 -L85 -0.0416746834003543 V84 -Q89 -0.042000012236354 A75 -V82 -0.0426424595896684 D60 -V67 -0.0426911400399872 S65 -V82 -0.0447166175214755 Y54 -D61 -0.0464350097802204 P62 -I88 -0.0512064755656656 G59 -F68 -0.0533544410196951 I55 -D61 -0.0542765700897774 S69 -A76 -0.0545309183196734 A64 -Q89 -0.0550528158220618 A75 -R86 -0.0557547587203899 Q70 -A76 -0.0557760953864498 D61 -Q89 -0.0565813401896791 S65 -R86 -0.0569124620066588 V81 -K91 -0.0587861234050377 A64 -P92 -0.0609343310691344 D60 -S65 -0.0617306455412077 L78 -F87 -0.0639858439024827 M72 -F77 -0.0665446419749856 P63 -V84 -0.0691048523441813 M72 -Q89 -0.0695277747508181 D60 -K91 -0.0707325612733545 A64 -V71 -0.0716188422570871 L80 -Q89 -0.0718295802460052 F77 -L85 -0.0723903496463896 G59 -C66 -0.0725276344260415 P62 -V71 -0.0736290860975361 A64 -F87 -0.0764169786210918 V82 -K91 -0.0784236005398515 S69 -L85 -0.0805758973198163 A75 -L80 -0.0813595269486846 Q70 -V81 -0.0814278450680925 I55 -D60 -0.0837052204204751 V71 -V82 -0.0843183920893154 F68 -A75 -0.0844631905632962 V67 -F77 -0.0847565760940681 G59 -A64 -0.0860041584895166 D60 -L90 -0.087051859679293 P63 -F68 -0.0882171697095777 I57 -S65 -0.0896738217986077 A79 -F87 -0.0912247250923248 L85 -L90 -0.0944360187604056 G59 -P92 -0.0973582308615533 S69 -L78 -0.101496478886065 L80 -F87 -0.102666811220598 S65 -L85 -0.102792789264151 F68 -F87 -0.103621029169484 V67 -L78 -0.105492160509362 F77 -V84 -0.105943679404977 S69 -R86 -0.10765879589779 V81 -L90 -0.110705169582442 F77 -A83 -0.112493355614054 R86 -K91 -0.115596474385224 S56 -P92 -0.115715445134753 A79 -I88 -0.116540159003915 S65 -A76 -0.1201946780552 V67 -V84 -0.120266014287314 D61 -I88 -0.121906497011914 A58 -S65 -0.124168312013968 S69 -A75 -0.125604901333815 D61 -F87 -0.126184325388868 P63 -I88 -0.126718454770109 M72 -L80 -0.129801689430281 L80 -I88 -0.136055407607945 A64 -Q70 -0.139164919645413 S65 -Q70 -0.139964099636348 A64 -K91 -0.144261190757517 V67 -F87 -0.145868646659782 V82 -L90 -0.145879931351636 A76 -V84 -0.146683670511915 V71 -F87 -0.147371640548536 G59 -S65 -0.149647045766814 S65 -M72 -0.149843903713638 S56 -P62 -0.151584729191167 A76 -I88 -0.151640207729492 L78 -R86 -0.151932765887714 S65 -I88 -0.15492103781316 F68 -F77 -0.155308736109962 A58 -K91 -0.157207053114792 D61 -V67 -0.158967884197189 L78 -A83 -0.160769511658531 F68 -V84 -0.161545574564329 D60 -F87 -0.163232071686041 V71 -L78 -0.164632563020893 C66 -I88 -0.165126082702462 F68 -A79 -0.165324688677329 P62 -V67 -0.170949877248564 P62 -S69 -0.17421143291108 F68 -V82 -0.177174883715746 D61 -L85 -0.178977465374693 V67 -A75 -0.181000836250311 C66 -V71 -0.18147674779564 A76 -A83 -0.184453220488581 M72 -V82 -0.185134033859319 L85 -K91 -0.185930881382017 A64 -R86 -0.186159394565465 V82 -Q89 -0.186907152889484 L80 -R86 -0.18849406565236 V71 -L85 -0.191692256107213 L78 -L85 -0.192020315114694 V67 -R86 -0.193520755272153 V81 -I88 -0.194466235293727 V82 -F87 -0.195686843196723 M72 -L85 -0.197101202608968 V84 -K91 -0.203301942646066 Y54 -D60 -0.211381419152089 V81 -F87 -0.224560367638553 A83 -Q89 -0.224681580359961 C66 -M72 -0.227110769057064 I57 -P62 -0.235026051638994 A83 -K91 -0.235612960213561 L78 -V84 -0.24066892481475 P63 -S69 -0.240790441700107 A79 -R86 -0.243113750735642 P62 -F68 -0.254607045350409 A64 -I88 -0.260292355891596 V84 -L90 -0.26144133420568 F68 -I88 -0.270292052852298 D61 -V84 -0.275295094379273 A83 -L90 -0.277125156828408 V71 -F77 -0.293037070510875 V71 -L80 -0.293541496713868 V82 -I88 -0.295231320013027 A79 -L85 -0.302509001789946 V67 -V81 -0.307675850687481 D60 -P92 -0.321031315728701 A79 -V84 -0.323797963368243 A64 -S69 -0.324894981063004 F68 -V81 -0.331409077099212 V67 -M72 -0.339964844289018 V71 -V84 -0.353098819641684 M72 -V81 -0.353576719296358 D60 -C66 -0.354908097990194 S65 -V71 -0.3662899407315 A83 -I88 -0.368530353836141 L80 -L85 -0.369431847156248 V71 -A76 -0.436654780327679 M72 -L78 -0.446333527391182