[Fri Aug 26 18:02:01 2016] >Input file: TMD6RDN8M1D.pdb >TM segments: 36-55 MAIDEN score = -5.5619 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- W49 -V54 0.381071881550984 W42 -A47 0.351316072848954 Q41 -A46 0.301640960905181 M38 -A46 0.138544381924085 L44 -W49 0.134653944744689 G37 -L44 0.13398230631415 L44 -V51 0.123426403969872 I48 -V55 0.105702324039585 A46 -V54 0.0992022617142201 A46 -V55 0.096223413055617 D36 -W42 0.0915447224535044 A47 -V55 0.0785312379702976 L44 -L53 0.0722577217849478 G37 -A46 0.0680383650538801 C45 -V54 0.0623658247097256 M38 -I48 0.0605078329142277 L44 -A52 0.0586296342873307 D36 -L44 0.0583046180387528 Q41 -L50 0.0321576758684055 G37 -V43 0.0193814973802109 I48 -L53 0.0171384314423633 D36 -V43 0.0166195076596658 L40 -W49 0.0151126283402254 M38 -A47 0.00921849493234195 C45 -L53 0.00735260299970908 L40 -I48 -0.000200754929227109 F39 -L44 -0.00585178649198248 C45 -A52 -0.0077288574607941 V43 -A52 -0.0182248864649246 D36 -Q41 -0.0228621565566716 F39 -A47 -0.0238623363659238 M38 -C45 -0.0271791247263735 F39 -I48 -0.0306691914760746 A47 -V54 -0.0349784834962961 L40 -A47 -0.0385626639132504 Q41 -W49 -0.0627372272541806 G37 -C45 -0.0759407791426744 V43 -V51 -0.0773688917391526 W42 -L50 -0.0880029304503553 V43 -I48 -0.116608166184241 F39 -A46 -0.118883581376922 Q41 -A47 -0.149133826266464 V43 -L50 -0.164069513041426 G37 -W42 -0.167393367147968 A47 -A52 -0.172129512724698 A46 -A52 -0.177818560416377 W42 -V51 -0.18171269921753 I48 -V54 -0.188718574254188 A46 -L53 -0.212253657628191 L40 -C45 -0.217242123562739 C45 -L50 -0.230801042437154 A47 -L53 -0.230855163558935 Q41 -I48 -0.265323550886759 W42 -W49 -0.276292310761762 W49 -V55 -0.30178499383825 L40 -A46 -0.311205688517017 D36 -C45 -0.318131121079514 A46 -V51 -0.322786415492811 W42 -I48 -0.347883313509699 V43 -W49 -0.349134219031428 C45 -V51 -0.351315060356976 M38 -V43 -0.365076913490096 M38 -L44 -0.42570890903313 L50 -V55 -0.452169320286003 L44 -L50 -0.468741382488364 F39 -C45 -0.697494399413689