[Fri Aug 26 18:03:54 2016] >Input file: TMD6W6W4M2D.pdb >TM segments: 420-450_ 503-509_ 576-589 MAIDEN score = 13.0912 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C436 -D448 10 C436 -V447 2.28505764712598 K426 -F432 1.21424125883467 E431 -C436 0.820544324009692 L433 -E450 0.71088394956649 R434 -V447 0.672586538377518 F432 -E450 0.578727835845115 F432 -D448 0.566491434189045 Q435 -V447 0.543460950509893 G427 -F432 0.518473468931221 N430 -Q435 0.515301058684059 E431 -G449 0.475889538611029 S437 -V447 0.474805747094489 L580 -V585 0.459981460094305 Q435 -Y441 0.445204359511999 E431 -P438 0.434495993538792 F432 -G449 0.40422769710641 M424 -K505 0.360733439797452 L429 -R434 0.358411077961104 L429 -V504 0.33358057383701 V443 -D448 0.321576145799092 S437 -V442 0.311590665131801 V442 -V447 0.304497162176911 G425 -E431 0.279320205824702 E431 -D448 0.271246403116588 Y423 -D428 0.267945578750438 N440 -E450 0.261397407428572 P438 -S445 0.254637313027606 D428 -L433 0.253558103517183 D428 -V503 0.252909017029524 L433 -D448 0.24127771590603 Q435 -G449 0.233440634541201 K426 -Q435 0.230789272034891 K426 -A507 0.226355938291755 Y423 -A507 0.218914301030524 K426 -R434 0.201897078265607 D428 -G449 0.198881983238911 R578 -V585 0.196205178060942 C436 -E450 0.166298670855529 Q435 -D448 0.164897456972919 S439 -V446 0.163253448600662 F421 -K505 0.16307346294633 P438 -R444 0.15426678159261 G425 -K505 0.152739894663097 G427 -G449 0.147429949343639 N430 -D448 0.142499291891296 L429 -Q435 0.141006287804988 E431 -V447 0.133630146393795 E422 -G427 0.131837892244525 R434 -G449 0.126716681285326 V442 -G449 0.123314037317307 K426 -V503 0.119271398437869 D428 -D448 0.116717601456056 V576 -L586 0.11593655350485 G425 -A507 0.11457446304594 K581 -L586 0.112652854985926 G427 -E450 0.109571655005234 Q435 -R444 0.108273603101513 S439 -R444 0.104839686351605 L429 -D448 0.103712488754249 F432 -V447 0.103323526232554 L433 -V446 0.102642666943588 G427 -A507 0.100676947456063 F421 -D508 0.0979421419131405 C436 -G449 0.0939196703738086 P438 -V443 0.0919219326540675 L420 -A507 0.0912581151841336 K426 -D448 0.0897537896088144 L429 -K505 0.0887778089823876 E422 -D508 0.0885895225116959 L580 -A587 0.0881874705411045 S437 -R444 0.0831769431810334 V577 -L586 0.0823372625282917 K426 -K505 0.0785486602290977 L433 -V503 0.0749353127426386 N430 -V504 0.0672699900843454 N430 -I506 0.0665348943306152 A582 -A587 0.0650664176807454 F432 -P438 0.0640597386778513 G425 -Q435 0.0638633617202204 L429 -D508 0.0636249067570005 L433 -P438 0.0626604020199091 N430 -A507 0.0585109939443327 S439 -D448 0.0572012398741324 S437 -S445 0.05517579121911 G427 -I506 0.0506104144386685 P438 -G449 0.0504541149589501 L580 -L586 0.0490571500778594 Q435 -S445 0.04756350133081 S439 -S445 0.0459819146238249 F421 -G427 0.0454543163000478 R434 -R444 0.0383503289117044 C436 -Y441 0.0369195049409239 D428 -S437 0.0362800855903187 F432 -K505 0.0344366120088984 G425 -G449 0.0339850685152667 V576 -A587 0.0316877240967743 F432 -V503 0.0295848087404558 F579 -V585 0.0285778522106508 C436 -S445 0.027206816122324 L420 -D508 0.0268541372337081 N440 -D448 0.024101414260202 F432 -A507 0.023659993493907 K426 -V504 0.023394663931116 K426 -E431 0.0229249717663933 E431 -V504 0.0202656305739886 E422 -V504 0.0195438271446612 P438 -V446 0.0175687436459775 E422 -V503 0.0153546420503453 S439 -G449 0.0106374698318423 R434 -N440 0.00913219252298347 G427 -S437 0.00851606975606867 N430 -D508 0.00773523370613294 K426 -G449 0.00730439766415247 Q435 -N440 0.00322520110386573 G427 -K505 -0.000559364259497874 N430 -V503 -0.000897577784922055 Q435 -V442 -0.00201043370067988 S437 -E450 -0.00229855446942318 L420 -F509 -0.00370826032524318 F579 -A587 -0.00483704200101887 N430 -V447 -0.00608756895933116 L433 -G449 -0.00716507506165465 G427 -R434 -0.00757505495360888 R444 -G449 -0.00918080449219616 E431 -K505 -0.0111183923389568 E431 -I506 -0.0143562078923947 L429 -E450 -0.0188321426647982 S439 -E450 -0.019232174101465 E431 -S439 -0.0203484596387269 M424 -N430 -0.0206625891639449 R444 -E450 -0.0207553834804432 F421 -K426 -0.0207635548925911 R434 -E450 -0.0233975433707405 Y423 -I506 -0.0235043749226893 C436 -V442 -0.0236396904953047 D428 -F509 -0.0294681179723701 F432 -V504 -0.0294722624374728 R578 -G583 -0.0313009100060335 E431 -A507 -0.0323356153247429 N430 -S437 -0.0341370042133755 G425 -V504 -0.0366587010880064 P438 -V447 -0.0370553599027099 N430 -E450 -0.0384041829951262 Y423 -D508 -0.0405000745749622 F421 -V504 -0.040648216980256 G427 -C436 -0.041709235340563 F421 -F509 -0.0425236306653876 R434 -S445 -0.0450158015972563 E422 -K505 -0.0455714786921826 G427 -D448 -0.0479900651779137 Y441 -D448 -0.0528049309756069 G427 -V503 -0.0540023676583319 S437 -D448 -0.0554963588169214 Q435 -V443 -0.056392863491687 L420 -G425 -0.0589167897570801 N440 -V446 -0.0594396023872384 V577 -V585 -0.0601728731361684 F432 -S437 -0.0603719594965683 Y423 -V504 -0.0606403900053079 G425 -N430 -0.0607059226432929 Y441 -G449 -0.0610581667596013 F421 -A507 -0.0621941384649353 G425 -L433 -0.0634692524203109 V576 -N584 -0.0642440419996724 R434 -S439 -0.0664448430204623 G425 -E450 -0.066564809517168 E431 -S437 -0.0721023664950422 D428 -E450 -0.0731985180714725 N440 -V447 -0.0734703410131277 K426 -C436 -0.0761668126618167 L433 -K505 -0.0795908451216567 L429 -C436 -0.0818519670308255 K426 -S437 -0.0839934030410254 V576 -G583 -0.0841265160374718 P438 -E450 -0.0842002984083585 G427 -Q435 -0.0847744788001377 F421 -I506 -0.0849256005072346 E422 -I506 -0.0850566357682974 Y423 -V503 -0.0860440394172823 D428 -C436 -0.0861817159504765 E422 -F509 -0.0899332372428603 D428 -I506 -0.0916829835036976 Y441 -E450 -0.0933593658261267 N430 -C436 -0.094795167564834 V443 -G449 -0.0976139863973344 D428 -R434 -0.100420386030412 F432 -I506 -0.105652593068134 G427 -D508 -0.107480924661782 E431 -E450 -0.107947760743609 K426 -I506 -0.108238303457139 S445 -E450 -0.11339842441411 V576 -K581 -0.113501779972104 G425 -I506 -0.113835774935519 D428 -V504 -0.117252475144785 E431 -V446 -0.122370918807383 F579 -L586 -0.122494162967936 R434 -V442 -0.123596548722533 M424 -D508 -0.125913276663958 M424 -F432 -0.126121308501332 N440 -S445 -0.126436197889854 R578 -L586 -0.128144516964421 G425 -V503 -0.129147617829577 G427 -L433 -0.129671124891631 C436 -V443 -0.13063035172083 N430 -P438 -0.132625251836454 F421 -D428 -0.134763335334373 G425 -F432 -0.136043893658294 Y423 -K505 -0.13618664528201 M424 -V503 -0.13722101225073 D428 -Q435 -0.142053600148098 M424 -E431 -0.142716375792831 E422 -D428 -0.14304068807794 F432 -V446 -0.143771485386898 R434 -V446 -0.155045291638314 Q435 -V446 -0.156221135257353 S437 -G449 -0.159356657910618 V442 -E450 -0.160522871292851 Y423 -L429 -0.16279323660093 E431 -V503 -0.163783132902402 D428 -D508 -0.16558264638424 L433 -V447 -0.16749553538645 K426 -E450 -0.168839809309933 D428 -K505 -0.173527075654139 V577 -G583 -0.174891561034788 D428 -A507 -0.17997937926916 N430 -G449 -0.180500995024084 M424 -I506 -0.20532861474305 G427 -V504 -0.208289260154852 L429 -G449 -0.208688299631337 N430 -K505 -0.211797267281163 N440 -G449 -0.215839839931318 K426 -L433 -0.220268006422724 Y441 -V447 -0.230919452694653 L433 -V504 -0.233007213707609 V442 -D448 -0.238604726095029 S437 -V446 -0.250340595318975 S437 -V443 -0.25510742098399 L429 -A507 -0.261038668598713 E422 -A507 -0.275581689982296 F579 -N584 -0.277136058208685 V443 -E450 -0.278011195997795 S439 -V447 -0.289595991476733 C436 -V446 -0.29227708093262 V577 -N584 -0.295275961012297 M424 -V504 -0.296764535007317 M424 -L429 -0.300321593687275 Q435 -E450 -0.300486898984605 M424 -A507 -0.302851191746273 P438 -D448 -0.329473014086938 V576 -V585 -0.35281698771111 R578 -N584 -0.354789761507103 V576 -A582 -0.363625499957188 V577 -A582 -0.365468894377319 Y441 -V446 -0.36782747514609 L429 -V503 -0.395981294779428 L429 -I506 -0.417003436233105 C436 -R444 -0.618408696679856 R434 -D448 -1.04933387122531