[Mon Aug 29 18:04:17 2016] >Input file: TMD7ZPM5M1G.pdb >TM segments: 60-70_ 78-96_ 122-139 MAIDEN score = 17.0858 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- N84 -G90 10 D83 -I91 2.12668300568095 N84 -I91 1.09170175312781 V85 -G90 1.05367788358653 K87 -A94 0.898666881925111 V63 -I68 0.81578403816573 L126 -S131 0.568951186450108 V85 -I91 0.564326264314738 V85 -A93 0.526102400889962 H125 -P130 0.498291961026653 P89 -E123 0.457701994482881 L82 -I91 0.455286978549753 V85 -A92 0.451880303209943 E80 -P89 0.446989037960771 P64 -E69 0.438392508423766 V88 -A94 0.426432536195273 V85 -A94 0.386810347672126 P89 -A94 0.383512813215475 A81 -A92 0.35319131388909 P89 -P130 0.34687486163522 Q86 -A93 0.345400164114924 Q122 -A128 0.320829015743028 K87 -A93 0.30975598444582 E80 -Q86 0.260413895268394 K87 -H125 0.249619626326252 L129 -G135 0.246301530273481 E80 -V85 0.24403648548248 Q79 -N84 0.237966392308658 Q79 -G90 0.235342507513381 P89 -Q122 0.234595638765503 Q86 -Q124 0.228548642169291 Q122 -S127 0.225829868157476 K87 -Q124 0.224987787546426 Q86 -P96 0.211217970986808 Q124 -F132 0.20635489423903 V62 -E67 0.197981377145786 Q124 -Q134 0.192597508877231 Q79 -Q86 0.186307290525749 V88 -E123 0.175596276373999 D83 -P96 0.172919622944308 P89 -L126 0.166744958503169 S131 -R139 0.157048072729756 D83 -V88 0.15704714238298 Q124 -P130 0.146235335489001 K87 -E123 0.142873416131591 L82 -K87 0.142116241318835 Q79 -A92 0.142006853713774 P130 -R139 0.139802352231951 N84 -S127 0.135931050223305 L60 -I68 0.13564082126193 Q86 -A92 0.122813040370387 A81 -A94 0.120286757432647 V85 -A128 0.118697865962679 S127 -V133 0.11340663152105 A93 -S127 0.112335360619865 V88 -L126 0.103449900440025 P89 -L129 0.103252623415832 G90 -S127 0.102246495645493 K87 -L126 0.10162068465167 A61 -E67 0.0991083650352511 H65 -A70 0.0984553034254239 H125 -F132 0.0976380848867062 S131 -A137 0.0975469867780545 H125 -V133 0.0946920609057804 P130 -A137 0.0940923557053202 Q86 -L126 0.0922619410146064 D83 -G90 0.090439466557493 K87 -Q122 0.0903988937301488 A81 -A93 0.0879286242463819 V85 -Q122 0.0795393236557793 L129 -A137 0.0778940142206657 L82 -V88 0.0770258297996418 V62 -L82 0.0736727321695154 A81 -I91 0.0719045552639348 L60 -E67 0.0705946340753142 D83 -P89 0.070369506655946 A81 -K87 0.0678922270640712 Q86 -E123 0.066056619934701 A61 -L82 0.0657881310646945 V88 -A93 0.0644353008961507 A128 -R139 0.0635891830347104 L82 -A95 0.0536305695242385 D83 -A93 0.0521994005741413 L126 -Q134 0.0411875277699254 V63 -A70 0.0383850523565483 A81 -S127 0.0383633349504326 V88 -A128 0.0357495040728 V63 -E69 0.0351335889646176 A81 -L126 0.0328410573071238 L129 -R139 0.0311769253374914 P64 -A70 0.0287591753780072 A81 -V88 0.0250403879507548 H125 -Q134 0.0239668647251675 A70 -W78 0.0220724272729269 D83 -S127 0.021420864830813 G90 -A128 0.0178037601550486 H125 -G135 0.0157199648364683 G90 -L126 0.0153884143327034 V62 -E69 0.0149445807292245 V85 -E123 0.0143806503739973 W78 -V85 0.012742892301719 E123 -P130 0.0119243942252028 V88 -L129 0.0085987676690582 A128 -G135 0.0049145011715126 V88 -Q124 0.0046988644404401 G90 -Q122 -0.000454028370915349 N84 -P96 -0.00162875800103368 L82 -A94 -0.00229823741081514 L82 -A93 -0.00347161764377724 N84 -A128 -0.00440038989345093 Q122 -S131 -0.00705163568689571 P130 -G135 -0.00907113152720607 V62 -A70 -0.00923054424390912 A81 -A128 -0.00941212444959305 V85 -P96 -0.012117747925241 A128 -Q134 -0.0121882500548063 Q86 -A128 -0.0154178371346365 P89 -S127 -0.0157574578942334 W78 -P89 -0.0159612874370741 Q124 -V133 -0.0171516145407049 Q122 -L129 -0.0189048809784667 Q122 -V133 -0.0206455778622643 G90 -A95 -0.0210158422051308 V88 -P96 -0.0221142050526062 S131 -W138 -0.024045650892754 E123 -L129 -0.0324379292178496 I91 -S127 -0.0329242820808818 E80 -A94 -0.0331536739389859 K87 -A128 -0.0391531068741668 W78 -I91 -0.0403147051124613 N84 -P89 -0.0410918690154354 W78 -N84 -0.0445068982183571 D83 -A95 -0.0458610066082317 F132 -A137 -0.0537495538281823 Q79 -P89 -0.0540292731917038 D83 -A92 -0.0605377249045276 K87 -S127 -0.061678100205871 I68 -W78 -0.0617492181197443 E80 -A93 -0.0620494367460571 N84 -L126 -0.0643418178948286 P89 -Q124 -0.0667459183632015 G90 -E123 -0.0687416957249776 E123 -A128 -0.0716766354611682 A61 -G66 -0.0766619903572545 N84 -A94 -0.0802943135856111 P89 -P96 -0.0812802297269117 V85 -H125 -0.0834492094954946 A61 -I68 -0.0889470334922091 A81 -Q86 -0.0894467756287183 W78 -Q86 -0.0949686993357794 F132 -R139 -0.0960954538918379 Q86 -S127 -0.0986181682894869 E123 -F132 -0.0990315638500441 I91 -P96 -0.0998477061200684 Q86 -Q122 -0.105339837536177 L129 -D136 -0.10561691544933 V133 -W138 -0.10727849290082 Q79 -I91 -0.107967352061936 E123 -S131 -0.108999364025318 Q122 -F132 -0.112899773755316 N84 -A95 -0.11870100451176 A81 -G90 -0.12035426828958 E123 -V133 -0.120999449423206 E80 -G90 -0.121168803587946 Q86 -A95 -0.135177646536945 P89 -A128 -0.138789417773962 L82 -S127 -0.139512013061762 K87 -P96 -0.139749743857298 W78 -D83 -0.140600464210705 A81 -P89 -0.14086874308485 E69 -W78 -0.143152335365635 N84 -A93 -0.146726062817045 Q134 -R139 -0.148615139924519 L60 -G66 -0.151464462729775 V133 -R139 -0.153130583513887 P89 -A95 -0.153225928546892 Q124 -L129 -0.167043463340932 S127 -F132 -0.167400278578821 F132 -W138 -0.173924889072743 E80 -I91 -0.181198480702258 V88 -A95 -0.185623250061974 A128 -V133 -0.185825447025208 Q124 -S131 -0.186836779107951 V88 -H125 -0.188762611940831 W78 -G90 -0.18969806840508 D83 -A94 -0.192035817326481 Q86 -I91 -0.193599961737087 L82 -P89 -0.200552709686308 L129 -W138 -0.20307409699358 L126 -V133 -0.207822397944097 L129 -Q134 -0.208037870749768 V85 -L126 -0.211645082999048 Q79 -V85 -0.22100554428649 L126 -F132 -0.230217317473237 K87 -A95 -0.242135219587306 G90 -P96 -0.256232717012727 L82 -A92 -0.257298042814432 V85 -S127 -0.2691771574904 L60 -H65 -0.280238271776728 E80 -A92 -0.284183823007456 Q86 -A94 -0.30735636593108 P89 -H125 -0.307861974200559 V88 -S127 -0.309284831757012 V85 -A95 -0.318682671591186 H125 -S131 -0.31961817249036 K87 -A92 -0.347142923893365 L82 -G90 -0.352999926810133 V88 -Q122 -0.359533533772744 Q86 -H125 -0.387710719279903 V62 -I68 -0.487246629473613 N84 -A92 -0.559631467180834 Q122 -P130 -0.6012974184534