[Fri Aug 26 18:21:26 2016] >Input file: TMD8JUJ3M2D.pdb >TM segments: 295-312_ 324-364_ 393-410 MAIDEN score = 6.7016 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I326 -I359 1.51646546915394 I328 -L361 1.22626520719174 I326 -L361 1.21697491335593 W327 -L361 1.20971426008062 I328 -H363 1.08210609973588 I326 -D360 1.07647482740105 W327 -F362 1.0229357312922 W327 -F337 0.989570944393744 I328 -F362 0.967457832234649 H324 -L357 0.960357206110815 P364 -A393 0.808721633103773 H324 -I359 0.795680864773562 I334 -H363 0.77007119727833 W327 -I359 0.75714754806442 H324 -D360 0.696356786942877 E346 -A351 0.641153593931486 L398 -I403 0.617247622455253 R348 -S355 0.589845963192527 G331 -P364 0.580681742841743 Q325 -L357 0.572422967287618 R397 -I403 0.557969480967554 A330 -F362 0.516259232056405 F362 -L398 0.515257102403037 N399 -I407 0.448863993344406 Q325 -I359 0.446375115897096 I326 -F362 0.432059694507388 L344 -R358 0.431762149411377 P364 -D395 0.41008741045882 Q325 -D360 0.396109161938908 R402 -I407 0.391054813712362 I326 -I407 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