[Fri Aug 26 18:21:53 2016] >Input file: TMD8MZE7M1D.pdb >TM segments: 140-187_ 218-235 MAIDEN score = 76.2430 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A146 -A151 10 S164 -C178 10 P153 -Q160 10 L150 -D161 10 W163 -C178 10 V154 -Q160 6.54321122357896 V154 -L159 1.41603957570835 V145 -D161 1.41011310441112 L150 -V180 1.3462299099214 V162 -V180 1.34434749281712 L150 -V162 1.20457142742698 R166 -C175 1.188398992845 W163 -V180 0.921944147602212 V145 -W163 0.867061414109994 V145 -V162 0.799145690024957 L155 -L181 0.775522636328223 L169 -V174 0.735056900415587 L169 -C175 0.729106760083395 V145 -L150 0.727218722300915 V154 -L183 0.703153012134512 P153 -L159 0.68341051034688 L150 -L181 0.682767897810688 A149 -D161 0.673272135137429 V162 -L181 0.672059694081187 L155 -L185 0.667833777665214 V145 -Q160 0.662077341898848 V180 -F232 0.64875982408795 V154 -L181 0.641980109092559 L168 -V174 0.62970487934248 G177 -V235 0.604775999463717 A144 -D161 0.599224087613495 L150 -Q160 0.588867470949522 D161 -A179 0.582091348413181 L155 -G182 0.569936387365582 P153 -L181 0.566135545569111 W163 -L181 0.563825425397036 G148 -V162 0.554650225102892 Q160 -V180 0.541979909415081 A149 -V162 0.508405710314864 V145 -A151 0.502127040768424 A144 -V162 0.492295332208226 L155 -D161 0.488997172414852 S143 -V162 0.466319641248302 L181 -F232 0.462146620662131 L168 -C175 0.45768782821593 A144 -S164 0.447475944121716 V165 -C178 0.442045807625843 C178 -L234 0.439257747041963 P167 -C175 0.437247323443414 E142 -T176 0.435647074800653 L155 -S186 0.435616808963731 R166 -V174 0.43502123266008 L155 -Q160 0.431751367391195 A146 -P153 0.427496410084085 A147 -D161 0.416987179215013 S164 -T176 0.398611696727505 L181 -A231 0.390691458707375 A151 -V162 0.388390465684089 A147 -A179 0.378529742710228 P153 -W163 0.364105337808252 A179 -L234 0.355198947206858 L155 -L187 0.351408908535882 A146 -G152 0.33942676132284 G156 -L187 0.336581259940623 A146 -D161 0.326377752446655 G156 -G224 0.3141551982552 A179 -A233 0.312070509481758 A218 -A225 0.311967029317445 C178 -V235 0.310214322718577 V162 -C178 0.297644693560028 L155 -L183 0.289360974115802 S143 -A151 0.288230843640679 G152 -Q160 0.286496794578576 G157 -L181 0.286039175540493 A151 -Q160 0.283574364965406 L181 -A233 0.280263256506027 L155 -A229 0.277676958909197 G177 -A233 0.275385305854221 G156 -A231 0.274721060377644 V154 -A229 0.267024410869755 R219 -G224 0.263566328445675 A179 -F232 0.262208150794173 G152 -A231 0.259292267143652 E142 -C175 0.257845573530645 L183 -G230 0.254581526367097 G156 -Q228 0.251077569620216 L183 -Q228 0.246769501179736 E142 -C178 0.246293405240632 Q141 -G177 0.245697573859672 E142 -V162 0.242832394466552 S143 -A179 0.239955150277378 C175 -V235 0.235890364441351 A146 -A179 0.235692127230074 V145 -V180 0.233940805485299 Q160 -Q228 0.231413148191397 L183 -A229 0.230255339896003 P153 -L226 0.229093491747983 A184 -Q228 0.228964480380966 A146 -G182 0.227451654948672 R166 -G177 0.22684675037186 G156 -L226 0.22588508193418 L150 -A179 0.224905043524873 E142 -G148 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