[Mon Aug 29 18:11:00 2016] >Input file: TMD8NGV3M1G.pdb >TM segments: 63-90 MAIDEN score = -8.9969 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V85 -N90 0.687958143435482 L63 -P68 0.527533376276423 L63 -R69 0.513849410622958 R69 -V75 0.452018339034927 I66 -T71 0.363252539955589 K70 -Q79 0.335968963603817 G67 -I72 0.316270291554919 L82 -S87 0.268733848515248 I83 -L88 0.26868031331187 R64 -A74 0.255449218765799 K70 -V75 0.230170642626669 I66 -V75 0.210376719828857 A74 -Q79 0.207273719191456 A84 -A89 0.180045024403596 I66 -I72 0.158412459224742 L63 -P73 0.132200870833069 R69 -Q79 0.110839958463005 G67 -F76 0.103696352427747 L77 -A84 0.0977414908982799 S80 -A89 0.0939978562330586 I66 -L77 0.0933249292792047 S80 -L88 0.0926032100645795 V75 -A86 0.0871703231650134 G67 -V75 0.0799544309468043 L78 -A84 0.0760090777176221 I83 -A89 0.0757848243641166 P68 -L77 0.0716564638553319 R65 -V75 0.0567571806975928 L81 -A89 0.0490903593080212 L63 -A74 0.0477880142046705 T71 -S80 0.0417363909010442 L78 -A86 0.0413529573305258 I72 -L81 0.0382969014104209 L63 -K70 0.0270245932299575 R69 -L78 0.00646853166299666 K70 -F76 0.00592224967099364 G67 -L77 0.000252907748796494 Q79 -L88 -0.00236092602420168 I66 -F76 -0.0054148410780126 P68 -V75 -0.0167700639628885 K70 -S80 -0.017966577742575 I72 -S80 -0.0282274532596118 L63 -T71 -0.0314519347127664 L82 -N90 -0.0349132285539546 L81 -A86 -0.035261433999118 V75 -S80 -0.0404827228645199 Q79 -A86 -0.0461559489922472 P68 -F76 -0.0471341894485353 R69 -F76 -0.047911431112891 R64 -P73 -0.0490362280530094 P73 -S80 -0.0573164429310893 R64 -T71 -0.0610847113610395 A74 -L82 -0.0618578288558291 P73 -L81 -0.0661478863647611 G67 -A74 -0.0732509016555982 L77 -A86 -0.0749658705353431 R65 -K70 -0.0874274898249416 R64 -K70 -0.0885729521758533 T71 -L78 -0.0951620512241718 L78 -I83 -0.0975775012122355 Q79 -A89 -0.0980753107217343 L78 -S87 -0.0997951466138138 L77 -V85 -0.105398314721905 T71 -Q79 -0.105680614665114 R65 -F76 -0.110814087066407 L78 -V85 -0.112027778192775 Q79 -N90 -0.119349272397659 R64 -V75 -0.119753800310686 P73 -L82 -0.122494657649074 L81 -N90 -0.122694130188693 A74 -L81 -0.122745684919376 A74 -I83 -0.129240048025943 R64 -R69 -0.136029482586584 Q79 -A84 -0.144307534755651 P68 -L78 -0.150709479624469 P73 -L78 -0.151644464392658 S80 -S87 -0.152208440611901 Q79 -S87 -0.15506569073061 R65 -L77 -0.159260806067331 F76 -A84 -0.162599257581951 L63 -I72 -0.16353093476229 L81 -S87 -0.171597293058319 R65 -A74 -0.172454311182248 F76 -A86 -0.178995068460455 A84 -N90 -0.185569792751231 R65 -T71 -0.198165512219222 F76 -I83 -0.198630182556844 T71 -L77 -0.211937902166788 K70 -L77 -0.212555672831774 G67 -P73 -0.218634656762708 V75 -I83 -0.219793598100838 R69 -L77 -0.220016057578267 L81 -L88 -0.224870903065765 A74 -S80 -0.227750587336421 S80 -A86 -0.227758097143001 K70 -L78 -0.239685410885279 I72 -Q79 -0.240436173635922 L82 -A89 -0.24192673282122 V75 -L82 -0.24473284025609 I72 -L77 -0.252815368357389 F76 -L82 -0.255886317346425 F76 -L81 -0.257444397249142 T71 -F76 -0.267084999335028 I66 -P73 -0.275904357422816 R65 -I72 -0.285531094825057 L77 -L82 -0.297487683944567 I83 -N90 -0.309056545652059 I66 -A74 -0.320154505634006 S80 -V85 -0.341657907268354 V75 -L81 -0.349058378079639 L77 -I83 -0.382169734753275 I72 -L78 -0.408247493164583 Q79 -V85 -0.409525720766564 R64 -I72 -0.410706368145449 L82 -L88 -0.427075578140792 R69 -A74 -0.428084363070274 P68 -A74 -0.428468785648421 P73 -Q79 -0.467174988316375 R65 -P73 -0.485094020675176 P68 -P73 -0.598583609148492