[Mon Aug 29 18:11:23 2016] >Input file: TMD8NSV4M1G.pdb >TM segments: 257-269_ 280-287 MAIDEN score = -1.2203 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Q269 -L283 1.01976114817187 V262 -I286 0.220606617798361 S259 -A266 0.213713738493884 K257 -S263 0.192209110794567 S263 -L283 0.179166209940564 V268 -L283 0.177273979744819 Q264 -R282 0.168709086476357 Q269 -S280 0.161319953371155 Q269 -R282 0.156337350136479 A266 -A285 0.154925130263598 A266 -R282 0.151628123536948 Q269 -A285 0.145310780236124 Q267 -R282 0.138647049890643 C258 -Q264 0.134335746443528 K257 -V262 0.124403234411193 S259 -Q267 0.122667761634617 T261 -T287 0.117786827667196 S259 -A285 0.107833406453858 S259 -L265 0.10745144389554 Q264 -A285 0.0999069348767128 V262 -T287 0.0919149585738754 L265 -V281 0.0918933372426118 S263 -A285 0.088312221045614 S259 -T287 0.0870533852467434 Q269 -V284 0.0626480804617648 Q264 -V284 0.0557408880549173 L260 -A285 0.0513641105418792 C258 -A266 0.0504488556918927 L260 -Q269 0.0438000957193143 C258 -L265 0.0429758618252478 T261 -Q269 0.0329439168053094 T261 -I286 0.0327539774388583 V268 -A285 0.0319009387700184 Q267 -V284 0.00881200062143567 Q267 -V281 0.00229934694825196 S263 -V268 0.00136854229304717 L265 -T287 -0.00791005720055704 V262 -Q267 -0.0157260018513314 A266 -V281 -0.0167288249469479 L265 -I286 -0.0182659611373337 A266 -V284 -0.0226970936803823 T261 -Q267 -0.0253575629538614 T261 -L283 -0.0309045523955733 S263 -Q269 -0.0334165389005025 Q267 -A285 -0.0385932180576578 L260 -V268 -0.0425800897511515 C258 -T287 -0.0466728091047806 S259 -Q264 -0.0488494545305722 V268 -V281 -0.0557587928769046 T261 -V284 -0.0722075676543406 Q264 -Q269 -0.0744583871321483 S259 -I286 -0.0789739285948945 L265 -A285 -0.0791952699552523 L260 -Q267 -0.0827972055165089 L265 -R282 -0.0967412095748861 V268 -V284 -0.09865859110203 V268 -S280 -0.0990349979676233 L265 -L283 -0.103041130060788 V268 -R282 -0.104998172714112 S263 -V284 -0.109842425675181 Q264 -L283 -0.119458004944875 Q267 -L283 -0.130258412766862 Q269 -V281 -0.172133841048209 V262 -V284 -0.188041367991577 V262 -R282 -0.195065248483813 T261 -A285 -0.208248527335033 T261 -V268 -0.209476446794197 V262 -A285 -0.226879005483568 V262 -V268 -0.236824247576847 V262 -L283 -0.241134602808526 L260 -A266 -0.286173067605846 A266 -L283 -0.313104670694003 V262 -Q269 -0.346404732861619 T261 -A266 -0.368816099816251 L265 -V284 -0.385516468053125 L260 -L265 -0.386744388388348 C258 -S263 -0.472884948443309