[Fri Aug 26 18:24:19 2016] >Input file: TMD9UJM0M1D.pdb >TM segments: 400-418 MAIDEN score = -0.9359 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- T400 -A411 0.50407791297435 S406 -A411 0.375601464350308 A401 -A411 0.365556043951461 H405 -A411 0.293335540281934 G402 -L414 0.290817177645434 T400 -D407 0.26983539829867 A401 -A408 0.260045260985593 G409 -N416 0.231773261506654 G402 -A411 0.189475021379839 G402 -V415 0.14986810709938 G409 -M418 0.145854481400643 A408 -A413 0.125410844433458 G402 -G409 0.123823382003985 S406 -V415 0.123093660115728 T400 -H405 0.12122436525033 A401 -V415 0.113368828733036 V403 -G409 0.105991250764127 S406 -A413 0.094730137004039 A401 -L414 0.0942988463344107 A411 -T417 0.0938678367603272 H405 -V415 0.0869481260104967 G409 -L414 0.0832907267896901 A404 -N416 0.0822118683377004 V403 -A413 0.0745196959336387 G402 -D407 0.0696034773924961 T400 -G409 0.0674855253309565 T400 -L414 0.0577320489348487 A408 -L414 0.0566023623213492 A401 -D407 0.0460299617468802 A408 -V415 0.0350462294923028 V403 -G412 0.032393749959251 A401 -A413 0.0253464742067955 A404 -V415 0.0238242995721465 G402 -G412 0.016535912296769 H405 -L414 0.0112197138143907 G402 -N416 -0.00440766160097805 G412 -M418 -0.00557274228638738 T400 -V415 -0.00757846776593718 V403 -V415 -0.00796093889536387 T400 -A413 -0.0117564050306118 V403 -A411 -0.0120416174158358 V403 -A410 -0.0122678267175891 A404 -A411 -0.012845464494057 A404 -L414 -0.0138079020165378 A404 -G409 -0.0141896023072356 A408 -M418 -0.0153950032480168 V403 -A408 -0.0182117604081415 D407 -V415 -0.0398774490036669 G409 -T417 -0.0401296201661432 D407 -A413 -0.0410750477256037 T400 -A408 -0.0512634046695659 D407 -G412 -0.0555903954611194 A401 -S406 -0.068206220584674 V403 -L414 -0.0790916399963617 D407 -L414 -0.085241811087426 G409 -V415 -0.0884542142295182 T400 -A410 -0.096536805195957 A401 -G409 -0.102918919606381 A411 -N416 -0.111091897752674 H405 -A413 -0.121687772572262 A410 -V415 -0.143936135788907 H405 -N416 -0.147647523229313 S406 -G412 -0.149485584404666 A410 -T417 -0.152555300069101 A404 -A410 -0.152674330684692 S406 -L414 -0.165766995980147 G402 -A408 -0.169165299766003 H405 -G412 -0.19756205034007 T400 -G412 -0.200710889303247 G412 -T417 -0.203091960165488 G402 -A413 -0.209030075684089 A404 -A413 -0.209837891619521 A410 -N416 -0.218682296791285 A401 -A410 -0.224759190028072 A410 -M418 -0.228871505896168 T400 -S406 -0.233497567112246 G402 -A410 -0.245295873400235 H405 -A410 -0.251274887710892 A413 -M418 -0.253772631275812 A404 -G412 -0.258955752130136 A411 -M418 -0.262812440513996 A401 -G412 -0.380168190964667