[Fri Aug 26 18:24:38 2016] >Input file: TMD9VNF3M1D.pdb >TM segments: 62-82_ 85-102_ 122-138 MAIDEN score = -18.1022 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P78 -P88 0.860095494080409 A76 -D81 0.827691221065134 D81 -A86 0.772683247514971 A63 -I68 0.687330205400141 L77 -L91 0.67910880850417 A82 -L91 0.667277593773739 A85 -M90 0.653165915185865 P78 -L91 0.623385113836811 D81 -P88 0.586783898051745 A64 -D69 0.555046779416424 A82 -P88 0.511289590615643 D69 -F129 0.470383503006667 N74 -V95 0.434907760893006 L77 -E92 0.407209297917557 A85 -L91 0.347680178199184 A86 -L91 0.342004226617842 V73 -M90 0.336433635386711 A89 -G97 0.326663960865534 D69 -V75 0.324030005977943 P66 -N74 0.302738112802296 P66 -T132 0.293828737358406 L77 -V95 0.262342313986335 A63 -D69 0.25724884523891 F70 -G96 0.256993114139155 N74 -G97 0.252642051059154 I68 -V75 0.22399993082784 I68 -V73 0.220941640354701 I72 -V95 0.202796810411531 P88 -G97 0.202412151707088 D69 -T132 0.195059783154097 D69 -A76 0.186950729326423 A82 -G87 0.18166611378733 E92 -G99 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