[Fri Aug 26 18:25:30 2016] >Input file: TMD9WDC2M1D.pdb >TM segments: 70-115 MAIDEN score = -14.0186 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R98 -L103 1.83791307288527 V93 -L103 0.684884531614161 V93 -R98 0.497262408259975 A86 -Y91 0.424156802365202 P89 -L94 0.41361319355308 Q82 -Y91 0.40593285991617 P89 -S97 0.356259820484693 A88 -A110 0.353913289596849 R98 -C105 0.33787297537351 S97 -G107 0.295606949527628 Q82 -P89 0.243015571207662 V87 -F95 0.206458879520267 G85 -L94 0.179458044458 L71 -G79 0.179451961632662 S90 -A106 0.173459340070281 A96 -L103 0.170172432979427 V100 -G107 0.150921944390781 P89 -G107 0.13210415792386 Y91 -G107 0.125009158969402 Y91 -A106 0.119347344333923 A88 -G107 0.115040301744552 A88 -L103 0.114959521304685 S101 -A106 0.112748940020921 G85 -G107 0.11230130723273 A102 -A110 0.109466725416345 Y91 -S97 0.103446162442887 G79 -A88 0.10014481132832 C105 -A113 0.0996828997757979 V77 -A86 0.0952689726370628 V93 -S101 0.0947693530166056 S90 -A110 0.0947222029975245 S101 -W109 0.0925942895283933 L71 -L80 0.0909557780185581 G92 -V100 0.089795604206671 V83 -V93 0.088758315242619 A76 -A84 0.0886903043267027 G92 -V99 0.0876020955507806 G85 -S90 0.0839529514332535 Y91 -R98 0.0835422254931517 L80 -A88 0.083516014760777 A104 -V111 0.0825054907670704 G92 -A110 0.0823352897465153 L103 -V111 0.0813473780592275 A84 -V93 0.0811396461246039 F95 -A106 0.0800204846082018 G85 -A106 0.0791331940228126 G81 -A88 0.0790976943237904 V83 -Y91 0.0775817935732186 G92 -G107 0.0773553201173445 A96 -G107 0.076663352668711 Q82 -V87 0.0763236404097745 L94 -V100 0.0749330496467887 L80 -P89 0.073886998943847 A88 -W109 0.0737263711633691 S90 -L103 0.0737262847538576 Y91 -A102 0.067849697827405 L94 -A104 0.0675717971875751 S97 -A102 0.0673552611630532 V100 -C105 0.0653798417367621 P89 -R98 0.0634429846701217 A88 -C105 0.0622385448181282 L74 -Q82 0.0619553032805875 P89 -F108 0.0592474856785068 V99 -A104 0.0591256448138702 S90 -G107 0.0576478801866145 G85 -A110 0.0543684331770926 A88 -S97 0.0536778789411638 A76 -G85 0.0523022323341769 L94 -L103 0.0480148084469594 A86 -F95 0.0476456900776219 V93 -A106 0.0470243229628124 F95 -V100 0.0460266193121859 F95 -C105 0.0458954933193478 G92 -S101 0.0456602866902334 G92 -A104 0.0370903762517099 A86 -A106 0.0360641625720604 A96 -F108 0.0337698241992506 A106 -G112 0.0325875525661248 V83 -G92 0.0322506663044217 L94 -G107 0.0260417686561425 A88 -A102 0.0244775663247592 V87 -A106 0.0227008222684768 G79 -A86 0.0226804274777539 L75 -V83 0.0212883008612481 G107 -A113 0.0205203562117395 V93 -F108 0.0203794149217282 V87 -A96 0.017366369314586 A73 -G81 0.0151241106964983 V87 -A110 0.0113984919019137 G92 -C105 0.011147662374496 F95 -S101 0.0102220110722395 T70 -F78 0.00967545416876447 L71 -F78 0.00872220110338251 V77 -Q82 0.0081082605182794 C105 -G112 0.00803297199025788 P89 -W109 0.00712645979631388 L94 -A106 0.00687220585541937 V99 -F108 0.00284002256270544 A84 -A106 0.00213171140780055 A86 -L94 0.000998038833142978 T70 -G79 -0.000327557442754145 P89 -A102 -0.000778011330120343 A84 -L94 -0.00170479858944717 A110 -V115 -0.00203153630730668 A84 -G92 -0.00362300771427382 V87 -G92 -0.00503606501524478 S101 -A110 -0.00820893624435648 R98 -F108 -0.00886373298217258 G85 -F95 -0.00930576266001459 V93 -V99 -0.00935189231245337 G92 -R98 -0.00948704134475431 S97 -L103 -0.00957635158502335 P89 -A104 -0.0101114585758419 F95 -L103 -0.0119233023997776 S90 -S97 -0.0133080871911364 G79 -V87 -0.0143526493404487 P89 -A110 -0.0152739639686006 L94 -C105 -0.0161520307970413 V100 -F108 -0.0162304556837332 G81 -S90 -0.0167732804533848 A104 -G112 -0.0230201622284447 A88 -V93 -0.0242950758718001 Q82 -G92 -0.0243749692291498 A102 -V111 -0.0263886366463177 V93 -A110 -0.0274843355740549 G81 -P89 -0.0304979017308062 A76 -V83 -0.0361391414384284 F78 -A86 -0.0364671732021913 V87 -L103 -0.0374959825059182 G92 -F108 -0.0529058307409158 G92 -L103 -0.0529099435592393 L74 -V83 -0.0534839928132014 Y91 -A96 -0.0576569683085708 P89 -V111 -0.0590596639979992 A88 -A104 -0.0605886077681332 W109 -A114 -0.060708925932057 A73 -Q82 -0.0610067271849632 S90 -R98 -0.0621865091417888 A102 -F108 -0.0653153874782568 A88 -F95 -0.0654619781854471 A88 -L94 -0.073095585969595 G85 -W109 -0.0741395158297253 S101 -F108 -0.0741476352156414 A86 -A96 -0.074880042943941 A106 -A113 -0.0748883155664005 S97 -F108 -0.0766151539745605 A96 -A110 -0.0770957016740581 A84 -A110 -0.0777817243002326 A84 -Y91 -0.0777925993793732 F95 -A104 -0.0790498591701052 V93 -V100 -0.0804343346634545 L103 -W109 -0.0807642537625934 V77 -G85 -0.0830503853249605 V77 -A84 -0.0865576431205763 L80 -V87 -0.0885391735879963 P89 -A96 -0.0889980702167163 V93 -W109 -0.0891760163245017 R98 -G107 -0.0918762244063742 V99 -C105 -0.0942445610720002 W109 -V115 -0.0994071410205435 A104 -W109 -0.101462400779249 R98 -A104 -0.102329071300735 Y91 -L103 -0.102964610643353 I72 -G81 -0.104245736833736 A84 -S90 -0.104314924064226 G79 -G85 -0.105691670231205 G92 -S97 -0.107847723709185 A106 -V111 -0.110582165910802 G107 -G112 -0.110914464511257 A86 -G92 -0.110968046148414 G92 -A102 -0.114512650576925 P89 -A106 -0.11598907339 T70 -L75 -0.117076185625169 F78 -V87 -0.117442854226898 S101 -G107 -0.119479902576502 V99 -G107 -0.121748779967001 S90 -A102 -0.123382620968249 G85 -G92 -0.123517181304774 L75 -A84 -0.124343636248875 F108 -A113 -0.125508415402564 G92 -W109 -0.125923799214158 A96 -W109 -0.128768272565579 F78 -A84 -0.129989801436796 F95 -G107 -0.131245010447842 A96 -C105 -0.136176106751934 G92 -A106 -0.136512024288533 F108 -A114 -0.136858989054591 V99 -W109 -0.138243536686502 F108 -V115 -0.138966140699723 F78 -G85 -0.141089124454835 V99 -A106 -0.14511280967273 G85 -V93 -0.145816128780757 L94 -S101 -0.14638816355374 L74 -G81 -0.153057851130099 V93 -C105 -0.156971503315945 V93 -A104 -0.15847270418105 I72 -L80 -0.161401018478182 A88 -F108 -0.167322348434181 A73 -F78 -0.16766022341489 L71 -A76 -0.168155653599451 F95 -A102 -0.169700197796811 Q82 -S90 -0.170168289367369 Q82 -A88 -0.176367463181561 L94 -V99 -0.178308177275301 L80 -A86 -0.179320899785942 G81 -V87 -0.183457029595743 R98 -W109 -0.186345168449983 I72 -F78 -0.187505669920078 A88 -A96 -0.189080483915982 R98 -A110 -0.189921793745542 A96 -A104 -0.189973699727624 V93 -G107 -0.191254546118236 A88 -R98 -0.192269495584619 R98 -A106 -0.192818799956626 S97 -A106 -0.193877976036502 V100 -A106 -0.203488011892563 L71 -V77 -0.205257641874263 S97 -A104 -0.206917621337242 V100 -W109 -0.208064869237515 L75 -Q82 -0.211280581308481 V83 -P89 -0.213061534481014 S90 -A96 -0.215865076226221 A88 -A106 -0.217139197763522 A104 -A110 -0.217216039813859 G85 -Y91 -0.219717127434197 V83 -A88 -0.220983373349625 T70 -A76 -0.221168653179306 A76 -Q82 -0.226538999796988 P89 -F95 -0.229088025253501 L94 -A102 -0.245080729616397 A73 -G79 -0.257424963480074 A102 -W109 -0.259127166009417 P89 -L103 -0.266805432614836 T70 -V77 -0.269967248773742 V87 -V93 -0.275654149589712 V83 -S90 -0.277516181694558 A73 -L80 -0.277715592577655 L103 -A110 -0.277917481460167 P89 -C105 -0.282569383676097 S90 -F95 -0.284693346251204 I72 -G79 -0.298501854453963 L80 -G85 -0.300588573587085 S97 -C105 -0.320511108497572 L75 -G81 -0.326527759876152 F78 -V83 -0.33059813455503 L75 -L80 -0.339441570823205 V77 -V83 -0.344783924621218 L74 -G79 -0.346654937340615 V87 -L94 -0.363728690223393 C105 -A110 -0.364063237147214 L103 -F108 -0.365894155328515 A96 -A106 -0.369984510001278 A86 -V93 -0.369995836623372 L74 -L80 -0.370211704347298 I72 -V77 -0.373274115981564 G79 -A84 -0.410206051238026 A84 -P89 -0.420540942179773 A96 -A102 -0.420859820381753 C105 -V111 -0.430301303128244 V93 -A102 -0.447138313087391 A102 -G107 -0.447186372588106 G81 -A86 -0.474382441396475 A76 -G81 -0.484473337560063 A96 -S101 -0.537841850391044