[Fri Aug 26 16:24:56 2016] >Input file: TMD9XI48M1D.pdb >TM segments: 105-122_ 131-148 MAIDEN score = -6.0844 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L108 -A136 0.677758428423739 R135 -L140 0.510863545708258 I110 -Y115 0.493078932023881 M109 -T114 0.487268908419347 V112 -L132 0.372440665320728 T114 -C122 0.357035376600469 Y115 -R135 0.298256749644322 I113 -C122 0.283007259063447 A116 -L132 0.28081461771141 A136 -G143 0.276051507463719 G139 -W146 0.249921839597868 T119 -L131 0.237895342870351 M109 -R135 0.233645708023257 T114 -L132 0.228855034596427 T111 -L132 0.202663639305056 M109 -L137 0.202628023027441 Q138 -E145 0.180196851514841 T111 -A136 0.166606958269357 I110 -A136 0.164954987077103 V112 -F134 0.16284467305774 K106 -L140 0.162190294718866 A107 -R135 0.16062916748195 L131 -G139 0.156625116984435 T111 -Q138 0.154080887381002 L108 -I113 0.1417957756879 L137 -G144 0.137387574311587 T114 -T119 0.134081670975753 V105 -G143 0.13308349715646 L108 -G143 0.13117446972978 T111 -F134 0.130625006615633 R135 -G141 0.125679861903045 I110 -L131 0.124781694550902 F134 -G141 0.124114620268623 A107 -L132 0.11599877728183 M109 -G139 0.114124509458565 A107 -G141 0.113897131973267 A116 -R135 0.113187774629704 V112 -A136 0.112381869257565 A107 -A116 0.11172983856144 A136 -G144 0.10613130336661 V120 -L132 0.103102089803768 V112 -L140 0.102843129868784 Y115 -L131 0.1015463744373 A107 -V133 0.101275127326818 T111 -G139 0.100245433881657 V112 -V120 0.0952800038627366 A107 -L140 0.0942035312214324 I113 -L131 0.0928248575456774 K106 -G139 0.0928058063891805 K106 -Y115 0.0913567859109143 R135 -G143 0.0913459573442872 L108 -L131 0.0878528897240649 K106 -F142 0.0864796140261124 V112 -L137 0.0846611525982581 V105 -G141 0.0834855364768369 L108 -G141 0.0823706181195281 K106 -T114 0.082040004203729 V105 -L137 0.0781115067914651 M109 -L140 0.0753389477438899 M109 -L132 0.0752380940426534 L140 -A147 0.0741627310363411 L137 -E145 0.0714814554990487 V105 -V133 0.0698305039073617 I110 -L137 0.0677297915419048 I110 -V120 0.0668476435373258 V105 -G139 0.0659332701258695 I110 -A116 0.0646343106329077 I110 -G139 0.0627767806518822 L131 -A136 0.0601834852447389 I110 -L140 0.0601817977556616 L108 -F118 0.0587764989304844 I110 -R135 0.0577809831723359 Y115 -A136 0.0576324238635539 V133 -Q138 0.0549195682750296 A107 -L137 0.0538566454337763 V105 -I113 0.0517996645708418 M109 -F134 0.0509585615263475 L108 -L132 0.0489252946730039 M109 -F118 0.0485195970472935 L108 -G139 0.0429755431535348 I110 -V133 0.0422566430775264 M109 -L131 0.0410100469525605 A116 -A136 0.0399744578560179 L108 -R135 0.0396291854618678 Y115 -V133 0.0362985757717288 T114 -A121 0.0342608192397469 T111 -L137 0.0322688080413176 L108 -L140 0.0321332653268769 V105 -I110 0.0313446324600406 L108 -V117 0.0291909093546838 L137 -W146 0.0266519582054324 G141 -W146 0.0265095340496861 T114 -R135 0.0252679828473614 L140 -E145 0.0246568768283044 T111 -A121 0.023407825737372 G139 -A147 0.0196226438761631 T114 -A136 0.0184138542077092 V133 -G141 0.018324995222883 A107 -G143 0.0172426973804402 I113 -V133 0.01654909874678 V120 -L131 0.0152563776184387 T111 -V133 0.00864782709825551 R135 -F142 0.00775024076789954 Q138 -A147 0.00452886518474394 I113 -F134 0.00124196332402082 V105 -T114 0.0011979646720035 A116 -F134 0.00114123451111836 T114 -V133 -0.00265885874182592 A107 -F142 -0.00335484856168211 T119 -V133 -0.00565688426162114 I113 -A136 -0.00643479208410014 T111 -V120 -0.00846467544230417 V117 -V133 -0.00903416708147997 Q138 -W146 -0.00939558994850009 M109 -V133 -0.00998063056304144 V117 -C122 -0.0125307046614722 V117 -L132 -0.0152489288070159 A107 -V117 -0.0170020835973217 Y115 -L132 -0.0172538555479687 K106 -G143 -0.0178361724870189 L131 -L140 -0.0180168331855324 T111 -L140 -0.0203816435558375 V105 -Q138 -0.0216784238217733 Q138 -V148 -0.0230202591198478 L140 -V148 -0.023622345462444 V105 -Y115 -0.0255718266750407 V112 -T119 -0.0268369703439095 V105 -F142 -0.0273162487729472 V112 -Q138 -0.030113769224867 C122 -L131 -0.0307280214319827 I113 -A121 -0.0316245234012333 A136 -E145 -0.0327220616218388 V105 -L132 -0.0335807785155842 V105 -R135 -0.035116134326584 V112 -G139 -0.0361879261189411 K106 -A136 -0.0374389117696151 L108 -F142 -0.0394194948032744 G139 -G144 -0.0401166194335731 V112 -L131 -0.0406438521361618 T111 -C122 -0.0410752524856934 I110 -T119 -0.0426597111887954 V105 -A136 -0.0462359695890253 M109 -V117 -0.0489692881208854 F134 -F142 -0.0541180145215465 L137 -F142 -0.0556706211029319 A107 -Q138 -0.0577981833314665 L132 -L140 -0.0599523392240329 C122 -L132 -0.06081569168134 L108 -A116 -0.0627579333040202 T111 -A116 -0.0646707513377813 V133 -F142 -0.0656496286050592 A116 -C122 -0.0676030812530559 Y115 -C122 -0.0683686673207555 A107 -G139 -0.0733320948032916 I110 -F134 -0.0744994878227041 A107 -Y115 -0.0760520949913085 V117 -L131 -0.0770060398087384 T114 -L131 -0.0778627930801266 T111 -V117 -0.0837875720742325 V112 -V133 -0.0844219184662283 L132 -G141 -0.085664946187519 A107 -L131 -0.0861625978253642 G139 -V148 -0.0898622025660938 Y115 -F134 -0.092587626281027 F118 -L131 -0.0982523804262474 K106 -R135 -0.0988239190950417 Y115 -A121 -0.103327487657582 M109 -T119 -0.104058587779925 V105 -G144 -0.104134588564599 G143 -V148 -0.110446180171201 L132 -G139 -0.113427100633428 F142 -V148 -0.116176284330621 F118 -L132 -0.116925971938029 R135 -G144 -0.119165257013694 T111 -T119 -0.122069564773211 K106 -V112 -0.124297593471268 A136 -F142 -0.129290814046318 I113 -F118 -0.131789591697486 V105 -W146 -0.140165137371043 Q138 -G144 -0.140219700665698 L137 -G143 -0.141958535762704 I113 -V120 -0.144693354572798 L108 -T114 -0.145030199064328 K106 -A116 -0.146029284025064 K106 -T111 -0.151121286919893 V112 -R135 -0.151154643299351 L108 -Q138 -0.156416500881547 V112 -F118 -0.157637260295475 L108 -F134 -0.158722075966206 A107 -F134 -0.162451175132689 V105 -T111 -0.164759665527406 L108 -V133 -0.166736196601684 I113 -R135 -0.169009870212554 G141 -V148 -0.173709211370503 L108 -Y115 -0.17420035678258 M109 -Y115 -0.175042683136985 T111 -R135 -0.182431829638175 G139 -E145 -0.183369441158949 L108 -L137 -0.187524986856131 V105 -L140 -0.197198121607101 V133 -G139 -0.208106302451409 A107 -T114 -0.21272389433513 K106 -L132 -0.218945401251516 F134 -L140 -0.219216255695269 A107 -A136 -0.225858689683872 A107 -V112 -0.227327411579331 A116 -A121 -0.227729112400542 M109 -A136 -0.234173536072463 I110 -F118 -0.235506747822331 I113 -T119 -0.239652128673987 L131 -Q138 -0.239942846379471 F134 -G139 -0.255528272899445 T114 -V120 -0.258288375962968 A116 -L131 -0.260326428709495 Y115 -V120 -0.260777389032401 L140 -W146 -0.262872732645913 T111 -L131 -0.266471588061905 G141 -A147 -0.268996588858192 V112 -V117 -0.27186607514649 Q138 -G143 -0.274021419823373 T119 -L132 -0.27769694189025 V133 -L140 -0.290774797695674 L131 -L137 -0.306786486008093 I113 -L132 -0.320152869395558 K106 -I113 -0.321951642596596 I110 -L132 -0.334165811505418 A107 -I113 -0.33629860897647 A116 -V133 -0.337789643087902 V105 -V112 -0.351068534089062 L132 -L137 -0.402159910247917 A136 -G141 -0.403321852960415 M109 -A116 -0.412798415099013 I110 -V117 -0.426323724498343 T111 -F118 -0.449943006580755 F142 -A147 -0.453210394636868 L132 -Q138 -0.500916614260351