[Fri Aug 26 16:36:29 2016] >Input file: TME1JY22M1D.pdb >TM segments: 524-546 MAIDEN score = -1.8719 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L525 -I530 1.22399818890082 V535 -E541 0.422463610847009 L525 -R532 0.420119700446908 R526 -V533 0.406988899826395 A537 -L545 0.317736433467237 A537 -M546 0.3145539532326 V535 -S542 0.223931301578681 V535 -P540 0.195478328813468 D538 -M546 0.192480846525516 R526 -D534 0.170940537892666 T536 -L545 0.152744519610224 D538 -L545 0.151429508202857 A537 -S542 0.142507826229959 D538 -A544 0.137158110611625 R524 -R532 0.104401397739909 V533 -L545 0.103267372885638 R524 -I530 0.100271075141499 L525 -V533 0.0957529128864523 D534 -L545 0.0816672794138515 V533 -S542 0.0507556400273503 L525 -L531 0.0296728854385764 V533 -E541 0.0146112731447336 D534 -E541 0.0123697484690362 V533 -P540 0.00745330744760364 V533 -T539 -0.0012849740236125 D534 -R543 -0.00366095085749851 T536 -M546 -0.00376554180130872 D534 -M546 -0.00473412373087445 N527 -D534 -0.0282512553408991 D534 -S542 -0.0282512972288509 V528 -V533 -0.0305590818123473 L525 -D534 -0.0327845889350504 T536 -S542 -0.051083176150059 R526 -V535 -0.0729122700959177 P540 -M546 -0.0923992370149622 R526 -L531 -0.0960957600249168 T536 -A544 -0.113880387166045 V535 -A544 -0.117155963689328 T536 -R543 -0.136605360409728 T536 -E541 -0.161230273872 V535 -R543 -0.164708655963723 D534 -A544 -0.1655154967254 T539 -M546 -0.170264435129474 N527 -R532 -0.184001471407296 D534 -T539 -0.187175653987649 R524 -V533 -0.193973974192629 E541 -M546 -0.202171163972111 V533 -D538 -0.2090046072043 T539 -A544 -0.213338119823076 R524 -L531 -0.230509297914458 V535 -L545 -0.236794209251446 A537 -A544 -0.271910458185784 V535 -M546 -0.274377508553667 T539 -L545 -0.288691261491678 N527 -V533 -0.302711665905904 A537 -R543 -0.330778256483086 R526 -R532 -0.360642683815568 D534 -P540 -0.377089168910685 D538 -R543 -0.503437983563557 P540 -L545 -0.514722049227956 R524 -S529 -0.588147965257274