[Fri Aug 26 16:58:10 2016] >Input file: TME3UKL3M2D.pdb >TM segments: 86-94_ 222-232 MAIDEN score = -0.5534 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A226 -K231 0.354469415255861 H224 -G229 0.278099225213341 S223 -R228 0.0743873365181671 S223 -L230 -0.0028200740885358 F227 -D232 -0.0131682148042858 I222 -R228 -0.0153256109123743 Y88 -P93 -0.0156554179030444 S223 -G229 -0.0459457340677146 L87 -N92 -0.0503224723137055 N225 -K231 -0.0796690363943919 L87 -I94 -0.105287811122404 I222 -F227 -0.118078699298596 A226 -D232 -0.127554874555437 Y88 -I94 -0.129346068381806 L89 -I94 -0.143027945985402 H224 -L230 -0.163743782344574 N225 -L230 -0.250384841864374