[Fri Aug 26 17:24:55 2016] >Input file: TME5SNH6M3D.pdb >TM segments: 334-352 MAIDEN score = -3.1418 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I340 -C348 0.23794588989821 M343 -V350 0.194472742507949 D336 -L341 0.184186963071527 I344 -I352 0.157784542562981 L341 -G347 0.13134239940152 L334 -N339 0.126679100430876 A346 -I352 0.105358681779894 S338 -N345 0.085897964108971 I335 -I344 0.0842597078913996 N339 -A346 0.0765309088881314 N339 -N345 0.0436694726977902 M343 -F351 0.0435302090718975 I335 -M343 0.0427401380471814 I344 -V350 0.0307926764831015 V342 -N349 0.0275357401487804 N345 -I352 0.0182992654413381 I340 -A346 0.0109526486662457 I340 -G347 -0.000628631832036763 M343 -C348 -0.0081146743413445 L341 -C348 -0.0215704174075508 G347 -I352 -0.0247235056654969 L334 -M343 -0.0252917592911839 A346 -F351 -0.0296639953940803 D336 -I344 -0.0342936654159514 N339 -I344 -0.0399256561982719 N345 -F351 -0.0478901321090781 S338 -A346 -0.0486655099660132 V337 -N345 -0.0584716603738489 L334 -V342 -0.0602596496968468 V342 -C348 -0.0680559802367364 D336 -M343 -0.0757253906648918 M343 -N349 -0.082073485303706 I344 -F351 -0.0826225721243254 I335 -L341 -0.0850247949222789 V342 -G347 -0.113311329374029 L334 -I340 -0.125298770761078 N339 -G347 -0.148074422527573 S338 -I344 -0.154959430041492 S338 -M343 -0.158144896988728 V337 -I344 -0.200571929570001 I335 -I340 -0.218307782338997 L341 -A346 -0.242404481990432 I340 -N345 -0.253761331545499 I344 -N349 -0.257714018645141 D336 -V342 -0.289670373726672 V337 -V342 -0.304281888374668 N345 -V350 -0.326876054376055 V337 -M343 -0.34283660484467 L334 -L341 -0.352904590470548 I335 -V342 -0.461651689731307