[Mon Aug 29 17:56:31 2016] >Input file: TME9Q4T9S3G.pdb >TM segments: A176-204_A269-276 MAIDEN score = -0.9122 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- S188A-K196A 0.32174442623558 V187A-C194A 0.231176762832943 S178A-S183A 0.212302851365414 S188A-G195A 0.171052039750873 N176A-C181A 0.159250838356788 G184A-R190A 0.13378335947841 G195A-T200A 0.106035885094372 V187A-S197A 0.0979265176716302 C191A-S197A 0.0879769625996558 V187A-G195A 0.08228248232769 S185A-C191A 0.0812674463007661 R190A-S197A 0.0749018459350583 L269A-I274A 0.0668434762220689 G184A-L189A 0.0632183745335526 S188A-C194A 0.0628766531166498 N176A-G184A 0.0617992436459912 G177A-S183A 0.036307108141616 V187A-K196A 0.0343090674810203 R190A-G195A 0.0323185271067086 L182A-V187A 0.0277888276795542 L186A-G195A 0.0269763051058196 N176A-S183A 0.0174073166577982 S185A-D193A 0.0109922443883201 P270A-F275A 0.00127606826570736 L189A-K196A 0.000303679619352515 L192A-S197A -0.00891189027661143 V271A-I276A -0.0344733428056896 S188A-D193A -0.0370902993328803 S197A-R202A -0.0465548414126102 S185A-L192A -0.0596052018009361 S185A-R190A -0.0626820964469761 L186A-D193A -0.0690657974610489 R190A-K196A -0.0864232601683129 L186A-C191A -0.0884908973953848 L186A-L192A -0.0906793031141291 C191A-K196A -0.107023089449434 S197A-V203A -0.10956164305137 L198A-V204A -0.110955722216666 L189A-S197A -0.112752277901208 K199A-V204A -0.122563726065395 R190A-L198A -0.122856833622357 V187A-D193A -0.143847313672742 G177A-L182A -0.160607725036152 N176A-L182A -0.174122845185072 L189A-G195A -0.207363928541517 K196A-P201A -0.211788378932109 L198A-V203A -0.239688953479567 L189A-C194A -0.307537695337789 V187A-L192A -0.399649067457171