[Fri Aug 26 18:20:16 2016] >Input file: TMF1KV56M2D.pdb >TM segments: 530-543 MAIDEN score = -3.9568 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R531 -Y536 0.208236280976229 S534 -Y542 0.185433688988301 S535 -I540 0.169490498243537 A530 -H537 0.160451604010479 R531 -A539 0.142999380066731 Y536 -Y542 0.108674717383696 H537 -R543 0.0558444381922785 Y536 -I541 0.0502293902484094 S535 -R543 0.0239686213922337 Y536 -R543 -0.0200099977888453 V533 -Y542 -0.0416756517819188 A530 -A539 -0.0606853489162282 A530 -T538 -0.0777517913275989 A532 -I540 -0.086324492941884 R531 -H537 -0.0883217941782206 A530 -Y536 -0.102955846603151 S534 -R543 -0.11129917466176 S535 -I541 -0.125665107712665 R531 -T538 -0.141592338250289 A532 -I541 -0.143952044015836 S534 -I541 -0.1480442327969 V533 -A539 -0.15931307315332 V533 -I541 -0.175094641278717 V533 -I540 -0.176959774569809 R531 -I540 -0.183627008477797 A532 -A539 -0.196919639049592 T538 -R543 -0.199251953780717 A532 -T538 -0.221843669274282 V533 -T538 -0.242431734602599 H537 -Y542 -0.253071194398064 S535 -Y542 -0.274623723079518 S534 -I540 -0.335702779073871 A532 -H537 -0.4410185244165 A530 -S535 -0.515579927405231 S534 -A539 -0.538410578255893