[Fri Aug 26 18:20:52 2016] >Input file: TMF1L4S2M2D.pdb >TM segments: 65-78_ 82-98 MAIDEN score = 0.7047 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- S85 -V90 2.35040893873685 V78 -L84 0.735747699580505 V90 -T95 0.676283749167682 D68 -H98 0.616856792899831 V76 -G83 0.589522070485129 D77 -P82 0.555726606506326 E75 -P82 0.445640174236946 S85 -T91 0.390834775549371 L84 -V90 0.389500484877937 V76 -L84 0.375533906715696 E75 -P94 0.364729551786052 S85 -P94 0.356222801994075 V78 -G83 0.320078299719916 D77 -V90 0.299277723853158 R87 -Y97 0.292221029442056 D77 -L84 0.291631901116484 L84 -L89 0.279833202609636 W65 -N70 0.257964488420936 G86 -A92 0.24167057651276 W65 -H98 0.23456028971354 K72 -Y97 0.222121443898621 W65 -K72 0.209252049192885 E75 -G83 0.190736910318462 L84 -T95 0.188939558272699 V78 -Y97 0.186588122103334 D77 -T91 0.185728647284926 D77 -G83 0.184897504753266 V78 -R87 0.181646299118553 G83 -Y97 0.180395486518982 V78 -F88 0.171736410245325 G83 -P94 0.143747720611993 K72 -I96 0.13561330362461 N70 -E75 0.129769469005724 S85 -I96 0.127519290634769 A74 -P94 0.12578746699829 V90 -H98 0.125562916006876 G83 -F88 0.104744171618719 A74 -G83 0.102656380242491 E75 -T91 0.0990246919387432 L84 -Y97 0.0985809055627229 I71 -H98 0.0962241226991389 V78 -S85 0.0941583534186536 G83 -T95 0.0874103457479352 S66 -A74 0.084053795626883 F88 -L93 0.0803974832312444 L84 -L93 0.0770204300779223 S66 -H98 0.0713880279097072 D77 -R87 0.068245719518897 S66 -I96 0.0663577910884685 A74 -F88 0.0624731153970952 A74 -T95 0.0580096994610901 V76 -R87 0.0531232728213789 G83 -L93 0.0515235272240253 G86 -T95 0.0474322784687651 F88 -P94 0.0470286646964062 K67 -K72 0.0465384393090673 F88 -H98 0.0423691229892099 A74 -L93 0.0419209120358133 P82 -F88 0.036227818095134 L89 -Y97 0.0345999414422815 A74 -I96 0.0323175357733376 E75 -L84 0.0294487264961916 D77 -A92 0.0234196813539636 E75 -Y97 0.0220919431577729 R87 -I96 0.0220670402863608 L89 -H98 0.0218045095426045 W65 -Y97 0.0215553575398961 V73 -P94 0.0214316346793817 G83 -I96 0.0194825478338725 V78 -G86 0.0176173886415505 S66 -E75 0.0129058443301471 D77 -F88 0.0121950024852095 A92 -Y97 0.0119566217756081 L84 -A92 0.0109769286583186 V76 -F88 0.00717493940267833 S85 -H98 0.0070683305430923 P82 -A92 0.00617009527117707 P82 -V90 0.00458518055656398 D77 -G86 0.000872035424306139 V76 -L89 -0.000374957367707651 V78 -A92 -0.00103722533454453 A74 -L84 -0.00477935956864339 R87 -T95 -0.00537868231031524 I71 -Y97 -0.00679227935917393 G83 -V90 -0.00681400840474211 E75 -H98 -0.00886844576280943 L89 -P94 -0.022591782973425 K67 -H98 -0.0227916685602687 L69 -T95 -0.0242589721326829 A74 -P82 -0.0248782027472637 P82 -T95 -0.0257877334800423 V76 -V90 -0.0285064333573883 P82 -L89 -0.0314310632417589 V76 -G86 -0.0330460611740739 A74 -V90 -0.0352691095717805 G83 -T91 -0.0367235819423177 T91 -Y97 -0.0375912012849792 L84 -H98 -0.0394849191020819 K67 -V73 -0.0417883488597663 A74 -S85 -0.0422635058951331 G86 -Y97 -0.042855385865249 D77 -Y97 -0.0446107103705851 D68 -I96 -0.0464294832625068 V76 -H98 -0.0510070554488813 E75 -A92 -0.0512381185461126 D68 -A74 -0.0590973390754188 F88 -I96 -0.0669507033152463 W65 -A74 -0.0678789069602331 S66 -K72 -0.0688210525190582 V76 -Y97 -0.0693179511801398 V73 -T95 -0.074725473443686 V76 -T91 -0.0759439677095339 G86 -L93 -0.0782354702154615 N70 -H98 -0.0794745243184987 V78 -T95 -0.0819145844056912 L69 -Y97 -0.0842599494058953 L69 -I96 -0.0844270615039875 D77 -L89 -0.0846017905548183 D77 -S85 -0.0860259159154642 V78 -I96 -0.0877859701028996 L69 -E75 -0.0881814598407462 S66 -I71 -0.0889054626973316 V76 -P82 -0.0897250603083251 E75 -L93 -0.0939606525077239 V76 -P94 -0.0952740276639599 L89 -I96 -0.101886134480202 D68 -Y97 -0.103003719345792 W65 -V73 -0.104395527595994 R87 -A92 -0.104678417813304 V76 -T95 -0.107556073095764 L84 -P94 -0.10950544896696 T91 -H98 -0.109931695676332 E75 -T95 -0.110478743909956 V73 -I96 -0.112939867684368 E75 -S85 -0.113322226563456 A74 -H98 -0.115273494009022 V78 -T91 -0.117794729173845 N70 -I96 -0.132732077217134 L84 -I96 -0.136487954947641 V76 -A92 -0.139906028696035 G83 -L89 -0.144157033616522 W65 -I96 -0.144661098945275 E75 -I96 -0.144854758814751 D77 -I96 -0.152617746338796 D77 -P94 -0.153692939454011 S85 -L93 -0.156823766362478 K67 -A74 -0.157238608918739 I71 -I96 -0.160156102395346 D68 -V73 -0.161638802662468 F88 -Y97 -0.168808512529111 D77 -L93 -0.170592340650627 L69 -A74 -0.181317760008803 V78 -V90 -0.185251186617846 E75 -V90 -0.185318808694967 G86 -T91 -0.189501420759051 V90 -Y97 -0.193000963695141 F88 -T95 -0.195554425038218 D77 -T95 -0.21301978054061 V78 -P94 -0.21975845747907 S66 -V73 -0.222955471766928 W65 -I71 -0.228208845232952 A74 -Y97 -0.228991113693006 V78 -L89 -0.236309474014488 V76 -S85 -0.238016218783905 T91 -I96 -0.239056645499219 L89 -T95 -0.244123581566384 S85 -T95 -0.245930472478004 L93 -H98 -0.256462485715302 P82 -T91 -0.261512143863555 V76 -L93 -0.262146829848643 S85 -Y97 -0.262934133606533 G83 -A92 -0.266874391098256 L69 -H98 -0.273937255755534 L84 -T91 -0.29181826401913 V73 -H98 -0.292226999914166 K72 -H98 -0.292562437944269 V90 -I96 -0.329602914501343 S85 -A92 -0.337670391183885 V73 -Y97 -0.380750671254394 V76 -I96 -0.425285175005464 V78 -L93 -0.430943676205699 P82 -R87 -0.437971047268149