[Fri Aug 26 18:22:40 2016] >Input file: TMF2A323M1D.pdb >TM segments: 248-290_ 295-304 MAIDEN score = 9.3806 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A249 -V277 10 L288 -R296 1.78737653324161 V252 -V284 1.34243000484718 V248 -V277 1.34178513825887 L253 -I285 1.29450507714554 L290 -L295 1.24333564106531 I254 -I285 1.21130301912203 L253 -M286 1.12406913736335 I254 -M286 1.12016432648301 V252 -I285 1.00602829274244 V257 -R296 0.878244647496476 V250 -V279 0.70194481473249 V257 -L288 0.67994786458982 L253 -V284 0.677035586506169 L288 -L295 0.672710942433686 A278 -N283 0.610327225000424 V250 -N283 0.610245370663509 D255 -I285 0.465054885986623 A256 -T297 0.452936110495329 I254 -H298 0.443733885661604 A256 -M286 0.400192367378664 V248 -G274 0.378825273598793 V248 -A278 0.374499718148556 G287 -T297 0.370512933898489 P264 -M286 0.355930105403637 A256 -K300 0.353201168493663 A249 -T276 0.340586946094267 L288 -T297 0.326184994684597 V257 -G287 0.324182656091406 D255 -L295 0.319136768145902 V248 -T276 0.312190648062095 S265 -V284 0.298493425484569 I254 -G287 0.29795465366721 P264 -I285 0.262776548994075 D255 -V284 0.24749643611334 M286 -R299 0.246442170143403 L267 -T276 0.24187646658608 N281 -G287 0.231778967248427 G258 -L288 0.230589194495677 V250 -V304 0.224757373294771 V250 -I285 0.224418801238035 R289 -T297 0.224126310336787 V250 -G282 0.219332016432948 G274 -N283 0.215957294365089 A256 -R299 0.212713339300195 D255 -Y261 0.208439737708264 V252 -N283 0.206706670397893 P264 -N283 0.204670014214575 V250 -G273 0.203744283680352 L253 -G287 0.203222664395841 Y261 -N281 0.202512735759645 G273 -V279 0.201770884918624 I266 -K271 0.201294029677897 L253 -N283 0.200591625874575 V252 -L302 0.198839503544527 G274 -N281 0.195534109566781 I266 -T276 0.194710799863308 D255 -G287 0.191764232605893 V248 -H269 0.191379629271094 P264 -N281 0.179850648734783 V252 -H298 0.173927703758855 S262 -V284 0.173669452005293 A249 -G274 0.173556379469085 L290 -R296 0.168549501779826 V250 -S265 0.166628448091286 D255 -V263 0.161039034726758 V252 -R299 0.160223002358132 R251 -M286 0.159910866997553 I254 -I266 0.151590855487694 D255 -N281 0.150351887163213 S262 -N283 0.150115255874436 A259 -I285 0.148600291812061 A256 -L288 0.144400316047644 A256 -V284 0.144310161058408 G287 -R296 0.144285117675807 S265 -A278 0.140744093718285 R251 -K300 0.136080936913249 V275 -V284 0.135375745988082 I266 -V277 0.132418838301417 P264 -G287 0.131125570890438 G258 -T297 0.130121452453973 V248 -L267 0.128786962897918 A249 -N281 0.127807408565588 L253 -V279 0.127594520732382 S265 -N281 0.12518094288913 H269 -V277 0.12446228317423 R251 -G274 0.12118355127228 L267 -N283 0.120989022747725 I254 -K300 0.120401367491934 V263 -H269 0.119142254962671 A256 -P264 0.117681111631319 G274 -G282 0.116441262808545 A249 -K271 0.115962768159028 S262 -I285 0.115634645332105 V248 -G268 0.113613458789903 G268 -T276 0.113121722362283 A249 -L267 0.112340113941178 S265 -V275 0.110456087478904 I254 -N283 0.109792601349367 Y261 -L288 0.109445413097577 V263 -G282 0.108537758655308 V279 -V304 0.108446920833758 V263 -G268 0.106784927920879 R260 -M286 0.106663615265266 A249 -S265 0.105938443806139 I266 -N283 0.105735192956997 I266 -G282 0.105722049066898 P264 -A278 0.100161394837476 P264 -G274 0.099553270527136 V257 -H298 0.0988511602762996 G282 -G287 0.0984927586665534 T276 -V284 0.0963906915287378 R251 -A278 0.0923285084265828 L253 -T297 0.0912769238176239 V252 -A278 0.0903040787545626 R251 -S265 0.0893354592145619 I266 -V275 0.0890317003652337 A249 -P264 0.0883419204309055 L270 -A278 0.088224139396107 V252 -L267 0.0879886926249007 V257 -I285 0.0862712465791731 L288 -R299 0.0860426437549547 L253 -S265 0.0846723840832699 A278 -V304 0.0815241857154394 L267 -V284 0.0812388358855909 M286 -I301 0.0811449856208286 S262 -G282 0.0809344512858501 A256 -S262 0.080630468675885 I285 -I301 0.0802355480082897 V252 -T297 0.0800960461551701 I266 -V284 0.077197493360158 R251 -L267 0.0745945795062998 I254 -T297 0.0735292816008926 V279 -V284 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