[Fri Aug 26 16:34:26 2016] >Input file: TMF3PQ13M1D.pdb >TM segments: 587-594_ 615-637 MAIDEN score = -5.3704 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V592 -G617 0.706904176875051 V592 -W620 0.695186699732272 D593 -V616 0.682926705707308 V592 -K619 0.651940205320075 L590 -W620 0.622761707743594 A630 -F635 0.59791478028095 Y591 -W620 0.543301075654488 L623 -F628 0.526513115493794 D618 -L623 0.44563537651195 Y591 -V616 0.441578151088405 V592 -S621 0.4206245915863 Y622 -Q633 0.356010280426359 D618 -R625 0.353679837979024 Q624 -P634 0.343590343356306 K619 -R625 0.33065877209367 Y591 -D618 0.328629058581421 Y591 -S621 0.31964585449061 V592 -Y636 0.310462686346475 N594 -W620 0.288595829511921 K627 -A632 0.270130645362189 Y622 -K627 0.266003760473635 D593 -Y622 0.243795474421685 G617 -Q633 0.240876518522121 Y622 -A632 0.232071648440837 L623 -N631 0.228979136673993 V592 -V616 0.211382574944383 S621 -P634 0.211193366313605 R625 -Y636 0.209040016996445 Y591 -N631 0.198565547423428 L590 -N631 0.192482115508392 T589 -Q624 0.187842450790604 D593 -R625 0.179237191092865 G617 -N631 0.177007197028653 R625 -P634 0.175503083505794 F628 -F635 0.171876734128924 T589 -K619 0.169518144842692 L590 -G617 0.166687440871459 F628 -Q633 0.157400758393445 V592 -F635 0.155426377108734 G629 -V637 0.151622205712811 G617 -P634 0.150216244158393 T589 -P634 0.147202379214281 D593 -P634 0.146819344368899 Y622 -N631 0.146140127408198 N594 -Y622 0.145707662840215 V592 -R625 0.143503883412359 Y591 -A632 0.132748070612031 G617 -A630 0.132331993969696 D593 -G617 0.122956248731837 K619 -Q624 0.122253708820923 L623 -Y636 0.121655270381009 D593 -A632 0.121448362728331 L590 -V637 0.118362035352196 G629 -P634 0.115469760155817 V626 -A632 0.112799288013095 G617 -A632 0.110138381134975 A632 -V637 0.109330030953439 S621 -V626 0.108685622439751 I588 -Q624 0.104754273057829 V592 -V637 0.103430300831697 Y622 -P634 0.102976587681404 D593 -D618 0.102745150259007 T589 -G617 0.100281644466589 D618 -K627 0.0908648200422244 I588 -W620 0.0875802173596441 K627 -F635 0.0862559141094374 L590 -R625 0.0861057785886877 D593 -F635 0.0782123273563972 G617 -R625 0.0707168104878608 R625 -V637 0.0664117583140382 L590 -A630 0.065656924222209 V592 -Q633 0.0624116795554626 D618 -N631 0.0549865296522962 D593 -Q624 0.0530756466246127 S621 -Y636 0.0520810178540021 T589 -S621 0.0498444401542253 T615 -L623 0.0493166745675921 K619 -F628 0.0462194038382471 N631 -V637 0.0446460279243119 R625 -Q633 0.0425330366394996 L623 -P634 0.0376662720967857 V592 -T615 0.0327866535458856 T589 -D618 0.032290089120131 T589 -V616 0.0304579019351419 G629 -Y636 0.0281714343632178 I588 -P634 0.0262572566559218 L590 -F628 0.0221349910327882 L590 -V626 0.0213004570980484 W620 -R625 0.0177468976755446 W620 -A632 0.0175647422589256 V592 -G629 0.0159454608975707 Y591 -G617 0.0151984615257224 I588 -K619 0.0146715371015707 T589 -L623 0.0131766835557166 D618 -A632 0.0121994011961806 D593 -N631 0.0119759176977485 W620 -Q633 0.00926487897480022 R625 -F635 0.00877644944868283 N631 -Y636 0.00715636640624098 Y591 -F635 0.00419121374756681 Y622 -F635 0.00273526160660476 Q624 -A632 0.00260953687318111 L623 -V637 0.000364855479446646 G617 -Y622 -0.000441371182881012 I588 -V616 -0.000832817868106517 L590 -Y622 -0.00158159228097254 T615 -Q624 -0.0016771983031707 W620 -G629 -0.00760552038316664 V626 -Q633 -0.00975553108031502 L587 -F635 -0.013164963033053 Y591 -V637 -0.0158624155478622 V626 -V637 -0.0168205026067398 W620 -N631 -0.016916443792437 V592 -A630 -0.0193324879946082 V616 -Q624 -0.0222859470124762 L623 -F635 -0.0224635656800114 L623 -A630 -0.0246376155181007 W620 -V637 -0.0279785823186787 L623 -Q633 -0.0293295454800981 I588 -D593 -0.0302170828410601 W620 -F628 -0.0305221167616274 K619 -N631 -0.0305979602206286 S621 -Q633 -0.0318185777530733 G617 -Q624 -0.032195418261985 N594 -A632 -0.0322831015069172 I588 -S621 -0.0340101535068398 V592 -V626 -0.0344929498017033 K627 -Y636 -0.0349163372993768 T589 -A632 -0.0363125480738427 L590 -T615 -0.0374354340026004 R625 -A632 -0.0377960177584868 V592 -Q624 -0.0402408591357141 W620 -P634 -0.0411616245327915 Y591 -L623 -0.0421951944251044 N594 -V616 -0.0423030479075073 I588 -L623 -0.0427102990422128 D593 -S621 -0.045399856399456 V616 -S621 -0.046794241207983 G617 -F635 -0.0522141539908417 N594 -D618 -0.0568414008270921 S621 -K627 -0.0582842961692745 D593 -Q633 -0.0589740157133127 S621 -N631 -0.0593911743069245 V626 -N631 -0.0594095067846006 L587 -P634 -0.0597377888016581 W620 -Y636 -0.063956773523731 D618 -Q624 -0.064138113944904 S621 -F628 -0.0661313812063863 K619 -A630 -0.0707268608192368 L623 -A632 -0.0715548858327919 N594 -Q633 -0.0728598016102098 D593 -L623 -0.0782693599587365 Y591 -R625 -0.0803678613973404 I588 -G617 -0.081910138862102 A630 -Y636 -0.0823413505337108 F628 -V637 -0.0858471169948487 V592 -F628 -0.0868061993528411 T615 -Y622 -0.0876554834792564 V626 -F635 -0.0885364033589742 T589 -Y636 -0.0910196509840813 S621 -G629 -0.0913360798463181 D618 -Q633 -0.0925636805064595 K619 -G629 -0.0930245962239495 I588 -F635 -0.0954124136003847 G617 -V626 -0.0969247377773472 S621 -V637 -0.098188352353717 A630 -V637 -0.100991392232287 L590 -Y636 -0.104726764887917 L590 -A632 -0.105045064516491 W620 -A630 -0.109359599848905 D593 -T615 -0.111905383363029 L590 -K619 -0.112812638843006 W620 -V626 -0.112901295352136 Y591 -A630 -0.113036569672358 Y591 -T615 -0.115910539912996 D618 -V626 -0.116166414113493 L623 -G629 -0.119774408349024 R625 -A630 -0.121647271455553 N594 -Q624 -0.124969408199645 I588 -Q633 -0.126240716251142 T589 -V637 -0.126995704616427 Y591 -Q633 -0.128029619089809 D618 -A630 -0.128527271005336 Q624 -A630 -0.133662151632206 D618 -F628 -0.136767915645582 I588 -N594 -0.13683707252372 D593 -W620 -0.136969636620282 N594 -P634 -0.139151402458388 K619 -A632 -0.143649560536661 T589 -N594 -0.144017653419434 K627 -V637 -0.146086626257754 N594 -K619 -0.149673217332335 V592 -A632 -0.150701828086403 L590 -S621 -0.152128192843444 G629 -F635 -0.155790162514312 W620 -F635 -0.161207346097043 F628 -Y636 -0.162575333044342 F628 -P634 -0.170891837832908 L587 -Y636 -0.173091316181645 N594 -L623 -0.174219385470225 D593 -K619 -0.174329827994089 V592 -K627 -0.176772288412298 Y591 -Y636 -0.177579220620801 T589 -Q633 -0.178172098461708 Y591 -P634 -0.178181768128862 Y622 -F628 -0.179074460640984 N594 -T615 -0.183366620119797 L590 -Q624 -0.185186319997472 Y591 -K619 -0.187312532519096 L590 -L623 -0.191044188980093 Y591 -Q624 -0.191207152740289 I588 -Y636 -0.19479704918965 K627 -Q633 -0.196107225508617 K619 -Q633 -0.197213647488511 K619 -K627 -0.205265019047154 S621 -F635 -0.205461581212064 V592 -P634 -0.206981006097762 Q624 -N631 -0.211406092755174 Y622 -G629 -0.220732888849556 Y622 -A630 -0.221891307332861 L590 -K627 -0.221957330689038 V592 -Y622 -0.225272594950105 Q624 -G629 -0.226713996010359 L590 -V616 -0.227694141262571 K619 -V626 -0.230054694369387 T615 -S621 -0.231223162381495 L590 -D618 -0.245495815280051 R625 -N631 -0.246349120598379 L587 -V637 -0.246602799373937 S621 -A630 -0.253888155154463 T615 -W620 -0.254694666765094 V616 -L623 -0.255658268840699 T589 -F635 -0.256282146344813 V592 -N631 -0.261544334459782 N594 -S621 -0.264316328745458 L590 -F635 -0.271958695458186 W620 -K627 -0.289054734503079 V616 -R625 -0.290089298064051 Q624 -F635 -0.292489664098282 T589 -W620 -0.320548551439835 G617 -L623 -0.325077827577283 Q624 -Q633 -0.344161581638277 Q624 -Y636 -0.359255749557684 V592 -L623 -0.369614233612751 V616 -Y622 -0.377911784684733 Y591 -Y622 -0.405972448164717 I588 -V637 -0.418655945950662 L590 -Q633 -0.434746370696759 Q624 -V637 -0.446168242125637 S621 -A632 -0.492771618598873 L590 -P634 -0.568671284364776 V592 -D618 -0.665507594938654 N594 -G617 -1.01968034059188