[Mon Aug 29 16:49:07 2016] >Input file: TMF3ZYF6M1G.pdb >TM segments: 125-163_ 186-201 MAIDEN score = 14.4538 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V130 -G135 10 F133 -M139 5.21354859063399 S136 -M141 1.642280494337 N125 -C150 1.15818734881418 C150 -L155 1.09265365809496 I134 -M139 1.03588076829679 V130 -S136 0.963478393751029 V130 -F145 0.734618801276934 V130 -L137 0.722780568106838 I151 -S156 0.7080764892214 F133 -L138 0.689170018931567 I134 -M187 0.668653926508609 F186 -F192 0.655105448742695 F186 -I191 0.638223092263305 F133 -G140 0.620886147286354 G132 -F145 0.606324644466173 M187 -F192 0.591689160963723 F133 -F145 0.584162912285395 P149 -L155 0.573437858077678 P131 -F145 0.546503547797301 F133 -F186 0.545432362796899 S136 -S144 0.533062170792196 N125 -I151 0.528936414825354 G132 -F143 0.528439628530359 S136 -F143 0.49614569587138 I134 -F192 0.466775516680801 G127 -P149 0.414949269968265 T129 -W147 0.40473418277478 T129 -S144 0.398141738607924 N128 -P149 0.390250219835198 N125 -P153 0.345865738126925 I134 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0.13877742582553 M139 -G146 0.131803547207319 G132 -F192 0.129870540460585 M139 -F145 0.129644552557394 F133 -M187 0.129473032557556 M187 -L196 0.1265617424426 L188 -Y195 0.124977423783691 T126 -P131 0.124626207449605 G132 -I191 0.124217341176218 V130 -P149 0.124044820199839 G127 -G135 0.123830113762222 S136 -L197 0.123330146476395 G132 -G146 0.122283401665268 G132 -I189 0.122089028435775 G140 -L197 0.117648859381752 I134 -I191 0.117130117577574 L138 -S144 0.11429026869336 S136 -G142 0.113159735944638 W147 -A162 0.112907353228138 N128 -M139 0.112555540597 A190 -L197 0.112041726149697 L137 -L196 0.111549403722856 I134 -G142 0.111054457523624 S136 -Q201 0.105980088095498 G132 -Y195 0.102898060734377 S156 -G163 0.0948816607570668 T148 -I160 0.091102830490879 G127 -S144 0.0902055329809492 L137 -I191 0.0858493503615354 S136 -T148 0.0839815054439678 L137 -F193 0.0831830572627192 L138 -I189 0.0829969634607877 M139 -A190 0.0824066535948277 N128 -I134 0.0784190107882283 A190 -L196 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