[Fri Aug 26 16:41:44 2016] >Input file: TMF4GQY6M2D.pdb >TM segments: 419-448 MAIDEN score = -12.7203 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- T419 -H424 0.553150387395569 V420 -L425 0.405847162818846 I439 -R445 0.36665802048341 H424 -S432 0.226717815863294 T419 -L427 0.215198351551938 Y440 -R445 0.185471646936403 Y440 -S448 0.180825110108929 V420 -G426 0.175558118880549 T419 -L425 0.174736985530235 G437 -P444 0.102323156380884 V420 -G429 0.0985266877547515 T419 -G429 0.0950468065794945 G429 -G437 0.070413490320169 T419 -F430 0.0686102768895172 F430 -A438 0.0641536950143875 A423 -S432 0.0602128013857781 M435 -M443 0.0601207290124142 V420 -Y428 0.0566062909216003 S432 -I439 0.0542442405373731 I439 -M447 0.0420253165382621 G429 -A438 0.0346835697165351 S432 -Y440 0.0272941746977806 F430 -Y440 0.0194366263429959 T419 -S432 0.0184133745504145 L433 -A438 0.00439300422033817 L433 -V442 -0.00274414173661874 H422 -F430 -0.00626709512490198 Y428 -L433 -0.00829810660276209 V434 -F441 -0.0195433543660659 T419 -G426 -0.0197494337844932 G437 -R445 -0.0202166756201994 A421 -G429 -0.020486662942292 A438 -V446 -0.0247717656240896 A438 -M447 -0.0256793574321303 A421 -Y428 -0.0379663760474709 Y440 -M447 -0.0404030198704573 Y428 -G437 -0.053314648554772 I439 -S448 -0.0708028013510895 A423 -F431 -0.0765963169556008 S432 -F441 -0.0791068663256013 F431 -I439 -0.0793974785358653 M435 -P444 -0.0796587683898964 V434 -V442 -0.0816287192195042 H424 -L433 -0.0818502980130296 H422 -G429 -0.0843339008827977 F436 -F441 -0.0853607491189337 G437 -V446 -0.0860474754814984 F436 -R445 -0.0887549386245259 I439 -P444 -0.0909835492501512 A421 -F430 -0.0914201092678777 L427 -F436 -0.0932601780380509 T419 -Y428 -0.0965706661049093 H422 -F431 -0.0986362325177712 F431 -A438 -0.100793124584929 F436 -P444 -0.101327038688048 L425 -V434 -0.103610926177992 F430 -M435 -0.106120836550608 F431 -Y440 -0.106974525771687 F441 -S448 -0.107178945763832 F430 -I439 -0.108563020968313 A423 -F430 -0.10975160080842 M435 -V442 -0.111296122696208 L433 -F441 -0.112142767580186 F430 -G437 -0.112155806059085 Y428 -M435 -0.112800953927948 H424 -F431 -0.12170153285403 G437 -V442 -0.123182996374843 F430 -F436 -0.124329863671602 Y428 -F436 -0.127728248844772 L427 -M435 -0.128059007918593 V434 -M443 -0.139744215153878 M443 -S448 -0.143020828620249 G426 -V434 -0.145318940232297 G426 -S432 -0.145988836698472 G429 -F436 -0.150070945229313 V420 -L427 -0.157537489130013 A438 -P444 -0.158677902223615 L433 -Y440 -0.163533968718527 F431 -G437 -0.1673848793362 G429 -M435 -0.173662775616595 G426 -L433 -0.177033759742154 L425 -L433 -0.183808711747553 G437 -M443 -0.186457602967986 H424 -G429 -0.193173498736052 G429 -V434 -0.198839791335192 I439 -V446 -0.200488855806808 S432 -A438 -0.201136895161656 M435 -Y440 -0.204916151841938 H422 -Y428 -0.207169795578698 L427 -V434 -0.212902934388522 L425 -S432 -0.218217239673445 G426 -M435 -0.226475123147406 A423 -G429 -0.228560728842981 F441 -V446 -0.230790337150514 A438 -R445 -0.247118688242737 F436 -M443 -0.247742196103131 S432 -G437 -0.252977110587403 G426 -F431 -0.266128777172012 L425 -F431 -0.270030310558993 M435 -F441 -0.281379103614271 A421 -L427 -0.289726686660944 F441 -M447 -0.290942258297183 H424 -F430 -0.291763231234144 Y428 -V434 -0.314420218815732 V442 -M447 -0.324813295617499 L427 -L433 -0.325294501504628 A423 -Y428 -0.331393281519458 F436 -V442 -0.333571667745296 Y440 -V446 -0.336083347984404 V434 -I439 -0.337303025986317 A438 -M443 -0.338306217755671 L427 -S432 -0.34264545081784 V434 -Y440 -0.354459289844216 V442 -S448 -0.362930196529208 L425 -F430 -0.366025542718473 L433 -I439 -0.366522379729633 A421 -G426 -0.394743945952377 H422 -L427 -0.407286718353088 F431 -F436 -0.430849093302428