[Mon Aug 29 16:56:32 2016] >Input file: TMF4I2Y3S2G.pdb >TM segments: A105-110_A115-123_A130-136 MAIDEN score = 7.4327 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I107A-V132A 2.09672334552627 N115A-M135A 1.57160737927906 I107A-F133A 1.17845964372068 Y109A-F116A 1.00420225478369 F116A-F133A 0.936887624046702 D110A-K136A 0.827953070696424 V108A-F133A 0.770501924736042 A105A-Q130A 0.744268177653082 F116A-V134A 0.641311207273232 V108A-V134A 0.601356518153427 F116A-M135A 0.588941081400281 I107A-V134A 0.540505027034317 V108A-V132A 0.413965831159077 L117A-F133A 0.406022752837102 V108A-A131A 0.394292766542588 Y109A-F133A 0.324204834216966 D110A-F133A 0.32315389673119 D110A-V132A 0.308944522915684 N115A-F133A 0.280545475817319 I107A-A131A 0.254242018136962 Y109A-S118A 0.251876519984723 A105A-V132A 0.235700891244562 F116A-A131A 0.206259136987706 L117A-K136A 0.169972839219583 Y109A-M120A 0.125787270236183 S118A-D123A 0.117644171085155 V108A-K136A 0.116539502024362 G122A-A131A 0.115904386456873 A106A-A119A 0.0998539089202217 G121A-A131A 0.0975686704761456 A106A-A131A 0.0955139657501975 L117A-V132A 0.0937478298515764 A106A-S118A 0.0909137779432276 V108A-F116A 0.0908595848506879 M120A-Q130A 0.081715904377532 A105A-F133A 0.081445573102231 D110A-L117A 0.0757096893798215 L117A-A131A 0.0687741638367667 A106A-F116A 0.0685053944674112 F116A-K136A 0.0659187562694896 G121A-Q130A 0.0636774836341862 V108A-N115A 0.0636391303035286 A119A-Q130A 0.0565254394032144 L117A-Q130A 0.0519982999779307 F116A-Q130A 0.0419955283076305 I107A-K136A 0.0366459510380244 S118A-K136A 0.0309222048508961 N115A-V134A 0.0268529780864848 L117A-G122A 0.0258368315618118 A105A-M120A 0.0222675809140853 N115A-K136A 0.0201451306819975 Y109A-A131A 0.0198704459642762 I107A-A119A 0.0144588594716888 I107A-N115A 0.0136524784089067 S118A-M135A 0.00893347204026762 D110A-A131A 0.00865779067849659 F116A-G121A 0.00630959954693289 A106A-V132A 0.00518481503371948 D110A-A119A 0.00442379834309126 D123A-A131A -0.000118557041375311 G121A-F133A -0.00179559999083745 D123A-Q130A -0.00228927303960447 V108A-A119A -0.0045338529438228 N115A-A131A -0.00717676521609717 A105A-V134A -0.00821582947612254 Y109A-N115A -0.00911307731213551 S118A-Q130A -0.0159145540433725 A119A-V134A -0.0210605476103125 S118A-V132A -0.0311628276175799 M120A-F133A -0.0321367530483316 A106A-M120A -0.0336821823880797 D110A-S118A -0.0346476889861049 A106A-V134A -0.0348145591441984 D110A-N115A -0.0397547828977387 I107A-M120A -0.0470208774250827 Y109A-K136A -0.048014719168501 N115A-V132A -0.0567132075540897 A106A-M135A -0.0617737108798733 Y109A-A119A -0.0661211336579948 Y109A-Q130A -0.0661299857905966 V108A-M120A -0.067815901914104 V108A-Q130A -0.0705209180883664 I107A-S118A -0.0719490694633138 G121A-V132A -0.0734513378371195 Y109A-L117A -0.0748600952872258 G122A-Q130A -0.0923619654590269 S118A-F133A -0.102206530217572 I107A-L117A -0.156790521526568 A106A-L117A -0.158612261484331 V108A-L117A -0.166548178265825 A119A-F133A -0.167213571440551 L117A-D123A -0.171824286090015 A105A-A131A -0.177619453820454 M120A-V132A -0.185965303459006 S118A-A131A -0.192359748461217 I107A-F116A -0.195258780892168 M120A-A131A -0.205207178751179 A119A-V132A -0.207216961023692 A106A-F133A -0.239920171370743 D123A-V132A -0.246356648795048 A119A-A131A -0.249267816031211 V108A-S118A -0.253575409433663 Y109A-V132A -0.258205294412037 F116A-V132A -0.264284680477383 L117A-M135A -0.26853634445494 D110A-M135A -0.279491779889893 I107A-M135A -0.311114312632955 I107A-Q130A -0.311357584134197 S118A-V134A -0.318868572629904 V108A-M135A -0.345017929517808 A106A-Q130A -0.397875012277614 Y109A-M135A -0.417336207091 L117A-V134A -0.461571553681901 D110A-V134A -0.515212525609858 Y109A-V134A -0.674502909452873 D110A-F116A -0.675089765488266