[Mon Aug 29 16:56:42 2016] >Input file: TMF4I337M1G.pdb >TM segments: 747-753_ 815-823_ 855-869 MAIDEN score = -5.1253 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- D859 -M868 0.302393454213621 L748 -G821 0.271548781992612 S818 -S862 0.228902767295697 V860 -M868 0.196854853712839 L753 -K816 0.18265204091874 Y750 -K816 0.173755887421289 Y750 -G821 0.173229067588045 D819 -D859 0.171333250291464 L748 -S818 0.159264654583827 Y861 -E869 0.153276024164104 A823 -D859 0.139114865165473 V749 -S818 0.137214542387685 Y750 -D819 0.134676834059108 K857 -V865 0.130378908997155 S815 -V866 0.127963898844946 E856 -Y861 0.11169359396849 A858 -V866 0.111047374422182 E856 -G864 0.108778554594788 A823 -A858 0.107484997743283 V749 -D819 0.107365183904218 L748 -L753 0.104559374029673 E751 -D819 0.0987307158090949 Y752 -S818 0.0944373816873654 T855 -S862 0.08501738612987 Y752 -F820 0.0744341087006717 V749 -G821 0.0721912774005384 L822 -E856 0.0699103025488126 K857 -G864 0.0582242881440251 F820 -T855 0.0510900980138365 I817 -A823 0.0497345056723504 A858 -V865 0.0466560112611858 I817 -S862 0.0388574472404812 L822 -A858 0.0374993444690945 S818 -D859 0.0306623414923569 Y752 -S815 0.0292235301180331 S815 -A867 0.0268281168695861 L753 -D819 0.0253030353321468 T855 -G864 0.0230880667195528 K816 -V866 0.0225231544079216 T855 -F863 0.0187474612212936 I817 -V860 0.0164264970236294 K857 -F863 0.0146600540011566 D819 -S862 0.013156854732656 L822 -D859 0.0116781629691127 E856 -S862 0.00764702214384355 A823 -V860 -0.00175517223161492 S815 -E869 -0.00255662151809988 I817 -F863 -0.00470580178024749 V749 -F820 -0.00486103207350475 F820 -S862 -0.00665514155147706 E751 -F820 -0.0148886761707683 G821 -D859 -0.0208936592654334 L747 -G821 -0.0236969494206924 Y750 -F820 -0.0269792659345995 D859 -A867 -0.029689011929698 L748 -D819 -0.0398977625955743 Y750 -I817 -0.0408556991493692 Y752 -I817 -0.0414971627389331 Y861 -M868 -0.0424115646355911 L747 -F820 -0.0487702383605413 I817 -E856 -0.0494447937125542 Y752 -D819 -0.0495006044269382 A858 -A867 -0.0496813696229204 V860 -V865 -0.0572488502080777 S862 -E869 -0.0590953738404025 V860 -V866 -0.0597866360247323 S818 -F863 -0.0636098373183454 E856 -V866 -0.0669858921750355 T855 -Y861 -0.0678845076195193 E751 -K816 -0.0709069668825366 E751 -I817 -0.0709891820794848 S815 -F863 -0.0751454755344902 L753 -S815 -0.079279252793059 E751 -S818 -0.0793996829892837 D859 -G864 -0.0803458851166541 L822 -S862 -0.0859489906179043 A823 -K857 -0.0901195379059683 L822 -T855 -0.0935256318898832 L748 -F820 -0.0966208577116408 K816 -F863 -0.100663955100575 A823 -S862 -0.108097721910938 A823 -T855 -0.108807148435078 S818 -V866 -0.109537871391222 L753 -I817 -0.110763722732707 Y861 -A867 -0.112458443762649 E751 -S815 -0.113276681195516 E856 -V865 -0.123132151712688 T855 -V860 -0.123637671613385 A858 -G864 -0.124659024614468 I817 -V866 -0.12685638125909 I817 -A867 -0.130323078101007 Y752 -K816 -0.132359649830635 K816 -G821 -0.134219435657169 D819 -F863 -0.136418865676656 Y750 -S818 -0.137776898141125 F820 -D859 -0.14185573925787 L747 -Y752 -0.142560433231314 I817 -L822 -0.148270946429661 K816 -A867 -0.156501798983917 I817 -D859 -0.157605293911249 V860 -E869 -0.158050302206056 V860 -A867 -0.165083669109169 L747 -D819 -0.168531735275797 K857 -S862 -0.16927995270809 F863 -M868 -0.176609573917746 S862 -M868 -0.19218533599354 S818 -A823 -0.192858071392497 F820 -E856 -0.198986444319575 K857 -V866 -0.2057695867406 L753 -S818 -0.205946265522009 D859 -V866 -0.220328547491082 D819 -V866 -0.221873827009252 F863 -E869 -0.256736017992118 Y861 -V866 -0.257549078586225 G864 -E869 -0.272699556290937 A823 -E856 -0.299667313499917 D859 -V865 -0.301198737621255 A858 -F863 -0.451381775631433 E856 -F863 -0.460176135697534 S862 -A867 -0.525206769915248