[Mon Aug 29 16:56:52 2016] >Input file: TMF4I337M2G.pdb >TM segments: 772-789_ 798-810_ 813-824 MAIDEN score = -3.0664 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L808 -I817 1.24565725539224 I782 -I817 1.20396511916573 K777 -L813 1.17731150191655 L809 -S815 1.07418225846704 I778 -L813 0.802615824467421 H799 -R824 0.745860836415281 H799 -A823 0.631446159092512 D801 -A823 0.621946332329747 L789 -H799 0.608204619554503 I807 -I817 0.580914668363523 L789 -I798 0.541136280396949 G781 -S815 0.518252749183777 I798 -A823 0.479882619081305 R775 -L780 0.479458068688171 G781 -K816 0.475433462134867 H799 -D819 0.4688025287522 G785 -I817 0.458949772557132 W772 -K777 0.458490715980253 G785 -K816 0.419387867381714 R775 -L813 0.405552959870332 H799 -L822 0.371631709834841 H776 -S815 0.359687069643998 I782 -I807 0.348220512594561 I802 -D819 0.321933594368948 K803 -A823 0.312231501961899 T774 -L813 0.305568455248033 R784 -K816 0.300772049227918 R784 -L789 0.298416609671923 C779 -N806 0.280429654172642 G781 -L808 0.277219314024 H799 -G804 0.275289022278357 A787 -K816 0.275218601076083 G781 -G804 0.272378998182259 K803 -S815 0.26510043142614 I802 -I807 0.25980614259523 G785 -N814 0.252534816121258 L780 -S815 0.25070992929407 D801 -R824 0.247342189549661 D810 -D819 0.245777885747781 D801 -G821 0.23099802299548 C779 -T805 0.230940650485525 G781 -N814 0.227533873191277 I807 -D819 0.218801431807101 G785 -N806 0.215356447149671 G785 -I802 0.209427298412179 I802 -I817 0.205858443126313 G804 -I817 0.20289767583134 R784 -N814 0.198039780781896 L808 -S818 0.198006796202719 G781 -I817 0.197781820421874 H799 -F820 0.187097156129863 K777 -D810 0.185576954630635 K803 -I817 0.182754280353022 C779 -L809 0.182075887892743 A787 -H799 0.181055514339932 H799 -K816 0.178061803632852 D801 -K816 0.175145657975121 C779 -F788 0.173608972641492 H776 -N814 0.171829588179284 L786 -N806 0.170109158695214 D801 -F820 0.166591442675728 F788 -K816 0.164749704373585 L789 -K816 0.164587992555981 K777 -R784 0.164580976127236 R775 -D810 0.157856772848418 C779 -L808 0.157673780692429 I778 -R784 0.155944200904635 I778 -T805 0.154903619016635 R773 -N814 0.153977959679906 I778 -I807 0.151507604472763 N806 -N814 0.147817940402994 I798 -R824 0.146141141636191 G804 -D819 0.141735122909419 A783 -I807 0.140346093809055 K777 -I782 0.133727264409132 D801 -D819 0.129824660584475 R775 -G781 0.126585308224717 N806 -I817 0.121340958908814 L789 -L822 0.121107732821397 N806 -A823 0.119982507945098 I778 -K816 0.119889383345044 A787 -S818 0.117782143704132 D810 -S818 0.11733578178938 R800 -F820 0.116908418791729 R775 -A783 0.115604904072842 C779 -I802 0.111123393141101 T805 -K816 0.109614624509167 N806 -S815 0.108545357706608 L780 -L809 0.107919462575981 H776 -G804 0.107836949194951 C779 -S818 0.106763829431142 R773 -I778 0.104940000208211 A783 -S818 0.103346614805725 G781 -I802 0.101787758870986 L786 -K803 0.0977874076994514 I782 -N814 0.0948862748140105 L786 -L822 0.0945457096108511 C779 -S815 0.0915198967841926 A783 -N814 0.0893018544325361 G781 -L789 0.0873449672966107 T774 -S815 0.0869409273258794 K777 -N814 0.0850372441937259 K777 -G785 0.0849877225198057 A783 -N806 0.0847328855337759 T805 -S815 0.0824379110754099 I782 -H799 0.082252790996624 L780 -L808 0.0820658013867259 R775 -L808 0.0819997206562603 H799 -I807 0.0809202117742162 R800 -S818 0.0805952359914346 R773 -G781 0.0796378368329753 A783 -G804 0.0767781833921117 A787 -I807 0.0729461750313423 K803 -F820 0.0724087424468314 L786 -I817 0.0716266225910207 L786 -R824 0.0689385099782824 D810 -K816 0.068753731308427 G785 -H799 0.0672737417170266 L786 -I798 0.0660674329436772 L786 -S818 0.0657552429102068 T774 -I782 0.0647075065285527 R800 -T805 0.0627403441453946 L786 -S815 0.0599965389135364 A783 -L808 0.0584561590682924 R775 -L809 0.0583726522658208 L780 -I802 0.0554378582408965 R775 -R784 0.0551280887281886 I778 -D810 0.0550789577929591 G804 -K816 0.0536983890129656 I802 -S815 0.0526652776056662 A783 -H799 0.0482121032066736 K777 -L809 0.0473604633455551 K803 -G821 0.0464595982749136 L789 -S818 0.0434926975486176 K803 -L822 0.0431694407054488 T774 -K816 0.0427967837717756 L786 -I802 0.0415561698946978 G785 -I798 0.0414592771080069 A787 -I802 0.0411911685290516 G785 -F820 0.0375561596064102 G781 -S818 0.0366764541006786 R775 -I807 0.0358152249180814 L780 -G804 0.0348675635417628 I782 -I802 0.0334095949029258 D819 -R824 0.0329096397223005 T774 -N814 0.0324965970464928 N806 -G821 0.0323479198347951 L789 -D801 0.0323347127873848 T774 -G781 0.0294736326164418 I802 -L809 0.0276608846574247 H799 -L808 0.0242644723463115 G785 -G804 0.023391568720502 L808 -N814 0.0231451179906961 I817 -R824 0.0221397082894551 R775 -I817 0.0206001572337302 L789 -R800 0.0197444924415553 A787 -I817 0.0193402009595172 T774 -I807 0.0179297771795106 F788 -S818 0.0164497877446781 H776 -G785 0.015719495158893 R784 -S815 0.01534643592186 R775 -S815 0.0133703843141273 T805 -F820 0.0111765158862054 I807 -S815 0.00872146890954451 R775 -K816 0.00708674270178333 F788 -I802 0.00630151690456771 G785 -K803 0.00597048600535288 G781 -D810 0.00553559078480781 I807 -S818 0.00492599384827841 I782 -T805 0.0048202675118425 A787 -I798 0.00471478585487262 C779 -R784 0.00469179079948256 I817 -A823 0.00297033717680925 T774 -L808 0.00286753753071101 G781 -L813 0.00237856197677644 I807 -F820 0.000740545362582612 I778 -N814 0.000131907078756988 L789 -S815 -0.000806715402513081 R800 -R824 -0.00131442838509388 L789 -F820 -0.00176107597172948 I798 -L822 -0.00272603712956787 R800 -I807 -0.00422375283219922 I782 -S815 -0.00466359470458777 L809 -K816 -0.00469078775303222 R773 -I782 -0.00478952714664604 G781 -K803 -0.0051633164931435 A783 -I798 -0.00602561109745814 F788 -I817 -0.00615310023916704 L780 -F788 -0.00745450505281298 A787 -A823 -0.00785940462224755 R775 -T805 -0.00793672124626488 G785 -L813 -0.00912526088032806 N806 -F820 -0.0106642378667216 G785 -L808 -0.0115428683645331 K803 -L809 -0.012762243040064 R775 -G804 -0.0135129211280656 L786 -D819 -0.0177271009581839 D810 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