[Fri Aug 26 16:44:34 2016] >Input file: TMF4I337M3D.pdb >TM segments: 816-826_ 837-868 MAIDEN score = -2.5583 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- M850 -T855 0.925614957170258 A849 -E856 0.89441939983072 M850 -E856 0.680543716812338 P846 -F863 0.550702667041664 A845 -V865 0.545582265703377 I841 -R851 0.519399509463545 A845 -F863 0.500832178237586 A838 -L854 0.476748805737802 P846 -K857 0.432823428351231 Y843 -R851 0.43041669450575 H826 -K857 0.39217773294081 A849 -V860 0.385732589839326 E847 -K857 0.384910378072931 P846 -V860 0.382860072083089 V837 -L854 0.366356537570047 A849 -L854 0.361137753361126 M850 -K857 0.327459639880889 G842 -A867 0.322475716778686 Y843 -V865 0.315681870462965 Y848 -V866 0.293525991789103 Y843 -V866 0.291949707454576 R851 -Y861 0.288097849529604 R824 -K857 0.263866061137148 Y843 -H853 0.26314846812863 G821 -G842 0.260521735606483 D859 -M868 0.256141168194028 H826 -Y861 0.253991261448515 D819 -M868 0.251546966998863 G842 -Y848 0.241518591884617 G821 -G839 0.240056871131078 P846 -H853 0.23653364742094 Y843 -A867 0.223264799492131 I817 -V865 0.220934953588467 M850 -V866 0.212273966328937 V837 -G852 0.209579548729844 D859 -V866 0.205238861203927 E856 -Y861 0.20434330291221 A845 -M868 0.204130215425569 G839 -T855 0.201556195599309 A845 -K857 0.185074723770075 G821 -I841 0.182577156760697 A849 -Y861 0.177325501172678 R851 -K857 0.17698894611963 Y843 -E856 0.173828292943628 E856 -G864 0.172445888124072 E847 -Y861 0.166777263266815 L822 -K857 0.15972389092332 H853 -F863 0.158240461095119 R851 -E856 0.154888650929814 P846 -T855 0.151712118484696 T840 -T855 0.150334938645059 M850 -V860 0.149769367078106 M850 -A858 0.14757627355891 L854 -Y861 0.145339207338143 M844 -G852 0.144907485176759 Y843 -Y848 0.142014024530127 A838 -E856 0.137963654558823 H853 -A858 0.136641093500637 G839 -M850 0.136580888803489 G839 -H853 0.135432309214372 Y843 -A849 0.13483350772816 E847 -D859 0.134123117651542 Y848 -D859 0.131796969272954 A823 -T840 0.130851722940163 H826 -T855 0.130637386522735 H853 -V860 0.129787928808683 V837 -Y843 0.123824607671207 I841 -G852 0.123560800145031 R824 -E856 0.122944293639955 L825 -Y861 0.122652811413606 V860 -M868 0.12233653467751 H826 -V860 0.121103456802088 A858 -V866 0.119515642685242 E847 -G864 0.118111693575401 G839 -E856 0.11712145355261 R824 -T855 0.115209833708308 L822 -L854 0.113628803607007 T840 -R851 0.112964480947252 I817 -G864 0.112778397044944 I841 -Y848 0.109076755937592 A823 -G839 0.106649326528027 A823 -G842 0.106417172498556 A823 -T855 0.106035486131331 G839 -G852 0.104971562235219 G842 -E856 0.102197276946695 T840 -E847 0.0982725648559009 A845 -A867 0.0979457941295307 L822 -A845 0.0977927936212063 E847 -L854 0.0974241769861619 Y848 -A867 0.0967434414805717 A849 -A858 0.0962754923657805 L822 -M850 0.0933095892391909 A823 -G864 0.0910827428397893 V860 -A867 0.0908139249235695 T840 -M850 0.0893405407785152 G842 -E847 0.0892187848339585 A845 -A858 0.0890316093661179 K857 -G864 0.0885077306096247 G821 -T840 0.0878493685986044 G842 -V865 0.0857685413162175 T855 -S862 0.0857340201650616 A845 -H853 0.0846560032859713 R824 -L854 0.0842661863431536 P846 -A858 0.0841149115132818 L822 -V837 0.0821604080981406 S818 -G864 0.0818132573330179 I841 -Y861 0.0807941709188418 I817 -A867 0.0774094815913792 Y843 -M868 0.0772908742457528 G842 -G852 0.0771399519555511 R824 -V860 0.0752684089840061 A838 -A849 0.0751964705090784 A838 -R851 0.0739078455156683 L822 -V860 0.0737817540920516 R851 -G864 0.073594488586183 T855 -F863 0.0697895583695778 M844 -A849 0.0687909251506853 K857 -V865 0.0661250120968779 Y843 -L854 0.0656839282494768 R851 -A858 0.0648570083876329 Y848 -V865 0.0631118326034468 L822 -M844 0.0623570844393573 I817 -A858 0.0604786001607902 Y848 -H853 0.0602078482672435 M844 -M868 0.0569765413447247 A849 -T855 0.0564090603446363 F820 -I841 0.0554162409885875 A849 -G864 0.0542874005934113 I841 -G864 0.0524025160140233 A845 -L854 0.0509790073064371 F820 -Y861 0.0477695154471132 F820 -G842 0.0467630167220086 I817 -M868 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