[Mon Aug 29 16:57:47 2016] >Input file: TMF4I337S12G.pdb >TM segments: D314-341 MAIDEN score = 28.3653 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- M316D-K337D 10 M316D-P336D 10 T317D-Y338D 1.19731447330168 L318D-T339D 1.0031176830161 L315D-P336D 0.92024016326488 L320D-L341D 0.915052150397831 M316D-A335D 0.788351700093635 S321D-L341D 0.722731826693757 L318D-P336D 0.613185672449856 D319D-Y338D 0.490241639440628 F322D-L341D 0.473227381109657 L318D-Y338D 0.46667731307106 N314D-A333D 0.454342479073991 E328D-T339D 0.449066743933448 T317D-T339D 0.445661212928574 D319D-L341D 0.421899431124249 L320D-Y340D 0.416997325330615 L315D-A333D 0.392356677336395 P330D-P336D 0.390270775321543 P330D-K337D 0.38124104499092 L315D-K337D 0.378341616320278 L320D-T339D 0.36679011571773 L320D-T326D 0.348723584540278 T326D-L341D 0.345798096422938 M316D-Y338D 0.328080125124978 L315D-S334D 0.31393712581091 L318D-K337D 0.287561894293261 L318D-Y340D 0.285131066813858 N323D-E328D 0.275165599447381 T317D-Y340D 0.259292843142193 N314D-P330D 0.257876989131053 M316D-A333D 0.25061277438063 D319D-Y340D 0.242461394946419 T317D-L341D 0.2417657335498 L318D-T326D 0.237265330721868 E328D-P336D 0.23514502574232 N314D-P336D 0.231047426516802 D319D-T339D 0.218317848890345 N314D-Y338D 0.195356435400925 D319D-P330D 0.176692350186891 T317D-T326D 0.172541395225071 N314D-D319D 0.154831735861692 E328D-Y340D 0.154280609781421 N314D-D332D 0.150699274276796 L315D-Y340D 0.142029397229079 V329D-S334D 0.139457382731703 T317D-S334D 0.137559924022718 L318D-N323D 0.125470335285269 N323D-T339D 0.123797969432998 N323D-Y340D 0.12031035064445 P330D-T339D 0.119009243493219 G327D-A333D 0.115948880114943 D332D-K337D 0.112795368507719 N314D-T339D 0.112547382159007 N314D-A331D 0.110103822421489 L320D-A333D 0.101903956119921 L315D-L320D 0.0900477508056563 N314D-K337D 0.0900112245507958 E328D-S334D 0.0897612844179676 G327D-T339D 0.0879993247440749 F322D-T339D 0.0859376566498318 L320D-V329D 0.0747805215258854 S321D-Y338D 0.0693097360638317 M316D-A331D 0.0684915551496528 T326D-Y338D 0.0679597848527522 N314D-S334D 0.0679057043645757 G327D-Y340D 0.0584321212102603 N323D-L341D 0.0564374728071058 A331D-Y338D 0.0561903209146624 D319D-L325D 0.0521889035935064 L315D-V329D 0.0459748232219557 L318D-S334D 0.0444673366289419 D319D-P336D 0.0375866640971747 S321D-G327D 0.0375319922269739 L318D-A331D 0.0368323360271154 T326D-A331D 0.0368151824189589 T317D-E328D 0.0207638987286973 D319D-A333D 0.0104886470942116 L318D-G327D 0.0102992149684376 V329D-L341D 0.00689808287949134 A331D-K337D 0.00668221661085422 T317D-K337D -0.00315684764464197 V329D-T339D -0.00331283286718165 V329D-A335D -0.00565682292270986 L315D-A335D -0.00666562135560178 T317D-A331D -0.0100252864939421 V329D-Y338D -0.0150539953471118 M316D-T339D -0.0152179610958112 L320D-E328D -0.020286238852392 S334D-T339D -0.0204824711004039 G327D-D332D -0.0218734815182061 R324D-Y340D -0.0265611552662492 L318D-E328D -0.0269523131106402 V329D-K337D -0.0298883893668958 A333D-Y338D -0.0319227677807183 L320D-P336D -0.0395288505148601 M316D-Y340D -0.0401609588901489 D319D-G327D -0.0404392068942419 L325D-T339D -0.0540271911534189 T326D-T339D -0.0553958266057952 A335D-Y340D -0.0612417378790848 P336D-L341D -0.0635981361372597 F322D-G327D -0.0684856059169663 V329D-P336D -0.0691542640330272 L318D-D332D -0.0730050718139781 V329D-Y340D -0.0776434649737963 L315D-Y338D -0.0804975450617877 M316D-L341D -0.0853629702227086 E328D-L341D -0.0875000334544573 P330D-Y338D -0.0877706493213821 L320D-P330D -0.0911467092582363 A333D-Y340D -0.0938667740554253 M316D-S334D -0.0944868215404511 L325D-P330D -0.0948956913283414 N314D-V329D -0.0949580978349547 A333D-T339D -0.0985862853396271 L325D-Y340D -0.102619835132706 E328D-Y338D -0.102832977912166 A331D-P336D -0.105463008173678 L315D-A331D -0.10739527135877 D332D-T339D -0.11131840763053 P330D-L341D -0.111891014398886 P330D-Y340D -0.115960094421082 D319D-R324D -0.117564437711507 D319D-T326D -0.118752874585233 G327D-L341D -0.130169123702141 L320D-Y338D -0.130277322788839 A331D-T339D -0.130328582194946 T326D-Y340D -0.131665698065363 M316D-P330D -0.131704163517718 D319D-E328D -0.131979218642651 T317D-D332D -0.133875370604943 L318D-A335D -0.135051036721048 P330D-A335D -0.137598709415571 T317D-P330D -0.138232208710713 D319D-K337D -0.142793820800512 T317D-V329D -0.147826960510723 L318D-L325D -0.148971070810914 E328D-A333D -0.150941904377958 M316D-V329D -0.152702517679952 L320D-G327D -0.16053180073975 F322D-Y340D -0.161660380263369 D319D-V329D -0.163544836055419 L315D-E328D -0.164965183674162 D319D-A335D -0.168960896904452 D332D-Y338D -0.178124108272944 L318D-V329D -0.206009986763775 T317D-P336D -0.219786029860125 T317D-A333D -0.220832143624127 L320D-K337D -0.226377477167384 S321D-T339D -0.23448999450411 S321D-T326D -0.235991781394025 M316D-D332D -0.240909444331703 R324D-L341D -0.247697490534897 L315D-T339D -0.26046665439226 L318D-A333D -0.263119764512178 L320D-L325D -0.289972243716308 L315D-D332D -0.292347159858647 N314D-A335D -0.306275254386425 L318D-L341D -0.308581413964557 T317D-A335D -0.330747796023742 L325D-L341D -0.352207530645307 S321D-Y340D -0.371669288135665 L315D-P330D -0.466203956435795 L318D-P330D -0.526918854096021