[Fri Aug 26 16:50:45 2016] >Input file: TMF4I3K4S2D.pdb >TM segments: A287-294_A296-307 MAIDEN score = -1.6855 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L293A-T299A 0.225086187536975 S289A-N305A 0.1713772650854 N296A-T301A 0.1031769819416 R294A-T299A 0.0941714256099807 V290A-G307A 0.0840909940772695 S289A-I306A 0.0787326756127174 V292A-I306A 0.0720242925754926 L293A-P303A 0.0657785438735434 L291A-G307A 0.0575205168285482 I288A-L293A 0.0572400089149014 S289A-G307A 0.0502942900733703 I288A-G307A 0.046637770827971 S287A-G307A 0.0456945126929087 L293A-T301A 0.0330209055711443 V292A-N297A 0.0198914490590647 L291A-N296A 0.0172211907756914 V292A-I302A 0.0159614157530861 T299A-S304A 0.0142205432598193 L291A-N305A 0.00395984636479518 V292A-P303A -0.00210071357556796 L291A-S304A -0.0040946365872041 S287A-N305A -0.00629466833424952 L291A-P303A -0.0163785815616224 L293A-G300A -0.0253939334014697 S287A-V292A -0.027118290364927 N297A-I302A -0.0279800747531529 S287A-I306A -0.0313672196269965 R294A-T301A -0.0376411653024809 R294A-I302A -0.0484604498489742 L293A-I302A -0.0484938814744531 T301A-G307A -0.0614603303267898 I288A-N305A -0.0632518812241458 L291A-I302A -0.0644792006424888 V290A-I306A -0.0757643111585491 L291A-L298A -0.0884309455152419 L293A-I306A -0.104873396005851 G300A-I306A -0.106467547930477 G300A-N305A -0.11130067775818 L298A-P303A -0.111558587843592 N296A-I302A -0.132626695572082 T301A-I306A -0.135385726059092 R294A-G300A -0.162515211182783 I302A-G307A -0.197917931778798 V292A-L298A -0.216658274893505 I288A-I306A -0.23597008055998 L293A-L298A -0.37994221729805 L291A-I306A -0.417629386490846