[Mon Aug 29 17:07:31 2016] >Input file: TMF4LPJ9M13G.pdb >TM segments: 275-319 MAIDEN score = 8.1917 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- T290 -V296 10 W312 -C319 1.68440818666813 L289 -V296 1.34159345629679 F287 -H297 1.04106406999077 D286 -L299 0.991069313608161 F287 -L299 0.852774254811481 L289 -H297 0.644984628660761 S288 -L299 0.57991161066858 P285 -L299 0.568361507815089 A276 -P283 0.546752346392727 F287 -R298 0.52569237883321 T290 -T295 0.485438725093302 F287 -D301 0.348290757058841 S288 -K303 0.333590213483881 A275 -P283 0.333586877563001 S288 -V296 0.270054630186683 S288 -G294 0.266554249307687 K278 -A284 0.260559297083419 L299 -V307 0.255188225151284 A284 -R298 0.252276101552523 D286 -D291 0.249935341954234 T290 -L299 0.231376256944182 H297 -G304 0.230464617660109 D286 -V307 0.229612228429366 P285 -Y302 0.220062162712836 Q280 -P285 0.202979289338161 Q292 -T314 0.197121813209378 T290 -D301 0.195139588523485 E277 -A284 0.183792316782481 K303 -L309 0.172658879196002 R298 -K305 0.164474507723964 L289 -T295 0.162594038388054 P285 -D301 0.149112539755101 F287 -K303 0.145140753297011 D291 -N310 0.142529574735027 A284 -T306 0.140300273599152 F287 -V307 0.138832404965824 S288 -Y302 0.137694602108894 D286 -K305 0.131188659410593 Q292 -R298 0.129915422744088 K278 -P283 0.125335589259962 D286 -V296 0.123112222967125 V282 -S300 0.115400690760814 A284 -L309 0.110094973749417 A275 -S300 0.107245601464669 S300 -L309 0.105391702516428 A275 -L299 0.103412116160288 P283 -S300 0.102885977786546 A276 -P285 0.102245824516753 A275 -D286 0.098108765035493 S288 -L309 0.0979137184896883 Y302 -L309 0.0978427026965611 L289 -S300 0.0937155169894643 A284 -Y302 0.0885655822947604 T295 -S300 0.0858649655308149 V296 -Y302 0.0850500931012421 T290 -S300 0.081807545043145 V282 -L299 0.076668288062993 N279 -A284 0.0695660448903257 R298 -T306 0.0682374609295196 D291 -L299 0.0668353135502975 H297 -Y302 0.0643324480008309 F311 -P317 0.0613515770830731 D301 -T306 0.0603548967281275 P285 -S300 0.0582860770644782 D286 -N310 0.0551307364073867 L289 -F311 0.0547665651149503 F287 -T306 0.053448089069601 L289 -L309 0.051775727782204 L289 -L299 0.0483545326364792 N310 -P318 0.0474890888253068 F287 -T295 0.0451232239390076 F311 -P318 0.037002534422425 R298 -L309 0.0297570804703433 P285 -F311 0.029239646248957 R298 -F308 0.0279565015364955 D291 -S300 0.0275671703759737 H297 -K305 0.0227959415502941 S300 -F308 0.020086582136154 S288 -N310 0.0135500351459528 H297 -L309 0.0100300480426254 R298 -G304 0.00956914161469458 H297 -V307 0.00607068730707905 S300 -T306 0.00558244563494892 L309 -T314 0.00458090914311682 A284 -V307 0.0020104548505393 R298 -N310 0.00150459177305873 T290 -L309 0.000731164899511194 Y302 -V307 -0.00445446899553481 D291 -Y302 -0.00542548924831987 F287 -V296 -0.0064231365712768 P283 -K303 -0.00685387694613482 P283 -V307 -0.0147291074637144 V282 -F287 -0.0168865616182687 S288 -F308 -0.0179621119265414 P285 -N310 -0.0258231317529614 A276 -V282 -0.0263124045301077 A284 -D301 -0.0335366483455219 P285 -V307 -0.0361500377734139 A284 -K303 -0.0369770899535279 S288 -F311 -0.0388369765176553 L299 -N310 -0.0415515921236569 P283 -L299 -0.0420467177060351 S288 -V307 -0.0435486257435529 L299 -L309 -0.0466528664808412 P285 -L309 -0.0481136849246813 L289 -K303 -0.0492299447923581 F287 -N310 -0.0504000684917632 F287 -G294 -0.0519498433337772 A275 -Q280 -0.0522389955281415 F311 -C316 -0.053238207323516 A281 -D286 -0.0536376122617641 A276 -A281 -0.0549873706642702 T290 -Y302 -0.0551474889643175 S300 -K305 -0.0616420491237796 A284 -N310 -0.0635618641179791 D286 -H297 -0.0638473036770935 V282 -S288 -0.0668721425481609 T290 -R298 -0.0681064483829052 D301 -L309 -0.0684230033653042 Q292 -A313 -0.0687990218956207 Y302 -N310 -0.0692040045962262 D286 -G304 -0.0709897460317777 D286 -T306 -0.0724003746430606 S288 -F293 -0.0770341777552943 G304 -L309 -0.0789805957232224 L289 -N310 -0.0809698526494511 P283 -L309 -0.0830869701033237 A284 -F308 -0.0840329173278791 G294 -D301 -0.0857612260127771 F293 -R298 -0.0868280488391953 L309 -C319 -0.0869618535846995 A275 -P285 -0.0872316140590907 F287 -F311 -0.0900392794731144 D286 -L309 -0.0910631288007373 K305 -N310 -0.0948784326442604 L289 -R298 -0.0984453446541855 L289 -Y302 -0.0993936007571794 F287 -F308 -0.10582826597071 D291 -F311 -0.107347780311653 S288 -D301 -0.108357372082061 L289 -V307 -0.110616799851655 A313 -C319 -0.113273938981991 E277 -P283 -0.113646238788609 R298 -K303 -0.114304835933954 V296 -D301 -0.115948757192954 K303 -F308 -0.117084647858372 H297 -T306 -0.117487310063676 W312 -P317 -0.119050160002039 P285 -T306 -0.120388080136506 N310 -C319 -0.120975300310876 P285 -H297 -0.126380231017411 D301 -F308 -0.127685449085633 V282 -R298 -0.128345588837062 L299 -F311 -0.129594998645344 T295 -Y302 -0.131568112644844 F293 -D301 -0.132090032602703 D291 -R298 -0.133072797417822 D286 -F311 -0.134552974570292 D291 -T314 -0.137105729539865 N279 -P285 -0.146245965390123 L299 -K305 -0.154877279638113 D286 -F308 -0.155322865163924 P285 -K303 -0.156786684950111 D286 -R298 -0.157178876405566 D291 -D301 -0.158647951799617 Y302 -F308 -0.159118768217278 R298 -V307 -0.160056306838808 A275 -A284 -0.162625911152186 D291 -L309 -0.164280254838254 L289 -D301 -0.165668338754483 T295 -D301 -0.167119889961168 D286 -D301 -0.169082812424703 F287 -Y302 -0.16918303565849 Q292 -H297 -0.169237218900411 F287 -S300 -0.170502113083428 A276 -D286 -0.171460049995471 D291 -A313 -0.171842681900917 P285 -F308 -0.171880668237925 L299 -G304 -0.175145228190788 D286 -K303 -0.175176134115239 D286 -Y302 -0.183185985640315 D286 -S300 -0.187072351291739 T314 -C319 -0.188573070819976 H297 -F308 -0.19350057700307 H297 -N310 -0.199427018773622 V296 -K303 -0.202737128842552 N310 -W315 -0.202912133504416 A284 -S300 -0.20396608764393 F287 -L309 -0.213077211768196 S288 -T295 -0.232029297791567 A276 -A284 -0.237410952948523 D291 -V307 -0.237903714514505 L299 -F308 -0.242326499234986 N310 -C316 -0.247769255116258 A284 -L299 -0.252721244784208 E277 -V282 -0.253603026899249 L299 -T306 -0.261903881866129 H297 -K303 -0.29548499035756 D301 -V307 -0.298720205758297 S300 -V307 -0.341353620526721 P285 -R298 -0.363568854613493 F311 -C319 -0.385890536627635 L289 -G294 -0.396145029073923 A313 -P318 -0.398940378805166 A275 -V282 -0.399157510116481 W312 -P318 -0.403537047875176 A275 -A281 -0.417267574958011 S288 -S300 -0.476948898166606 D291 -V296 -0.489014170074151 S288 -H297 -0.493951090633238 S288 -R298 -0.507782711537187 T290 -H297 -0.708002478189747 D291 -H297 -0.755410362168156