[Mon Aug 29 17:08:42 2016] >Input file: TMF4LPJ9M3G.pdb >TM segments: 305-314_ 374-402_ 406-413 MAIDEN score = 29.5250 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- F308 -M399 10 I400 -V406 9.59776548475367 V307 -I400 2.05832586546245 M399 -F407 1.21603623528636 I400 -F407 1.18528622529021 T397 -V410 1.15584794095373 F386 -I391 1.05906738762508 F308 -F398 1.04519067962837 V307 -D402 0.964794726688763 W312 -F394 0.930500933484625 N310 -T397 0.926960020691455 F308 -T397 0.829471402424987 F398 -V410 0.785482482015596 F398 -V406 0.784275280896432 M399 -V406 0.705414229200449 F311 -F394 0.682012134423465 F398 -F407 0.681715664373298 I391 -T396 0.668111603807675 L309 -F398 0.618679847518385 M399 -V410 0.612010962237385 T396 -Y409 0.598696709178412 T306 -M399 0.561328740654117 F311 -P395 0.555123299451868 F311 -D380 0.515648934075501 V385 -I391 0.505392029513871 F311 -T397 0.501026652574013 F308 -D401 0.492572636837327 F308 -I400 0.472192061320827 L309 -M399 0.462507394828603 F386 -T392 0.444918833121763 K305 -I400 0.441867596709888 T396 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