[Fri Aug 26 17:03:46 2016] >Input file: TMF5GX83M1D.pdb >TM segments: 249-257_ 259-275 MAIDEN score = 2.4007 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R255 -H271 1.20445307858619 H249 -F254 1.03144683522228 H252 -R275 0.59219217085707 F254 -S272 0.51564597736629 R255 -S270 0.433833353143805 S253 -A273 0.433072204722797 F254 -H271 0.390186243119405 H249 -H271 0.31617039941474 S253 -V274 0.287185893270801 R255 -A273 0.259890999546184 A257 -S270 0.250301052518881 H252 -H271 0.206519507359943 R255 -S272 0.206008558613334 W262 -G267 0.205051913597694 H249 -A273 0.159136024994178 R255 -S260 0.152284965019431 C250 -S272 0.142561808138276 S260 -H265 0.141260812417015 H249 -S270 0.139894422601575 S260 -A266 0.137864583560562 H252 -V274 0.133545229726996 C250 -R275 0.110375997951412 R255 -G267 0.106888336777195 L256 -S272 0.105445701335754 S261 -L268 0.101223499824132 H249 -V274 0.0972172911990929 C250 -S270 0.093149886672371 S260 -L268 0.0801397376985937 H265 -S270 0.0760240095424756 L256 -V269 0.0751061179158004 S253 -S270 0.0686432382425447 H252 -S270 0.0667709581223194 S261 -V269 0.0624710419405377 F254 -R275 0.0584440622950613 A257 -G267 0.057602001664562 R255 -L268 0.0520356336119461 S260 -V269 0.0502343297817496 M251 -R275 0.049139087013701 C250 -V274 0.0466670711372847 G267 -S272 0.0417686154353968 S253 -V269 0.0393351592444033 R255 -V274 0.0357902704410067 R255 -V269 0.032407921417736 H252 -A273 0.0298703629165962 A257 -H271 0.0237038344002771 A257 -L268 0.0159364869278935 C250 -L256 0.0145189563407422 L259 -H271 0.0140832490213507 M251 -L256 0.00318708718623117 L259 -H265 0.00135527903086441 L256 -G267 -0.00257345083938754 C250 -H271 -0.0119460565941316 M251 -S270 -0.015811147596084 A257 -V269 -0.0211988996649863 R263 -L268 -0.022568040172481 F254 -V269 -0.0228834488504913 S260 -S270 -0.0233686182076163 F254 -S260 -0.0288566111536932 A266 -H271 -0.0316398216306535 C250 -A273 -0.0399972599504492 L259 -S270 -0.0434519935130844 S253 -R275 -0.0438566617832221 V264 -V269 -0.043917843856165 H249 -R275 -0.0443009835241175 F254 -S270 -0.0564848621400147 L259 -V264 -0.0568100646689116 L259 -A266 -0.0648331944924614 L259 -G267 -0.0714499186859197 L256 -S261 -0.0767943367914339 S261 -S270 -0.0788253883550314 R255 -S261 -0.0829155148721565 W262 -V269 -0.0857397652787559 L256 -H271 -0.0990439355869044 F254 -L259 -0.103395211079021 A257 -W262 -0.105030962613478 A257 -S272 -0.107630624759198 H249 -S272 -0.113157446063651 M251 -S272 -0.117237768579864 M251 -H271 -0.11733283198133 F254 -V274 -0.128180069845966 R263 -V269 -0.129175753541644 W262 -S270 -0.13050400196261 H249 -L256 -0.136904477704503 L259 -L268 -0.139721042550022 S260 -G267 -0.15268846618518 L256 -A273 -0.16591736546783 W262 -L268 -0.211336285531748 M251 -A273 -0.223712879772414 S261 -A266 -0.225989222313399 L259 -V269 -0.232977604762221 L256 -S270 -0.235997717245689 H249 -R255 -0.256544780407302 S261 -G267 -0.260530331106117 F254 -A273 -0.280910951110075 S253 -H271 -0.325816494147251 H252 -S272 -0.342804611890166 M251 -V274 -0.357871739948202 C250 -R255 -0.388354567436275 S253 -S272 -0.488306895781133