[Fri Aug 26 17:04:22 2016] >Input file: TMF5GX83S3D.pdb >TM segments: C328-340_C391-402 MAIDEN score = 16.8876 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- C333C-C402C 10 V335C-L400C 2.29679206411693 W334C-C402C 1.90737621001753 C333C-V401C 1.79900902075541 R332C-C402C 1.08466329519165 W334C-L400C 0.985615412229821 H340C-D395C 0.934993888046158 W334C-V401C 0.756593337964317 V335C-Q393C 0.650248354571397 V335C-G398C 0.535905909546594 S336C-G398C 0.525976836962069 C333C-L400C 0.449444107189418 W338C-P399C 0.358078809358609 G337C-Q393C 0.350441843155743 C392C-G398C 0.347158690212885 G330C-C402C 0.339778024419546 S331C-C402C 0.284813286615542 H340C-Q393C 0.2752099278002 H340C-G397C 0.266389724546147 W338C-G397C 0.260950420229624 G337C-P399C 0.212906575005301 H340C-A391C 0.205298668549997 S336C-L400C 0.200650343756972 G337C-C392C 0.19486863168294 G337C-C402C 0.18153563735115 D395C-V401C 0.180203958959787 W334C-C392C 0.171462635524652 S336C-Q393C 0.166824068840657 G337C-D395C 0.144722642386337 S336C-C392C 0.143495705500955 R332C-V401C 0.133561494922675 V335C-A391C 0.133325991842026 G339C-G397C 0.131827377272886 S336C-C402C 0.12560210894729 V335C-V401C 0.116594511911027 G337C-A391C 0.115944829632033 W338C-L400C 0.111763347438168 W334C-D395C 0.109661054686288 P328C-V401C 0.102569785540237 K329C-W334C 0.0972166192143433 H340C-G398C 0.0904265878649024 S331C-L400C 0.0901058909251968 G330C-V401C 0.0894622064354094 A391C-G398C 0.0799703426869578 G337C-V401C 0.0753389755927412 A391C-S396C 0.0738554562743587 C333C-G398C 0.0714699628899398 Q393C-V401C 0.0674819745892811 R332C-P399C 0.065963406067036 G339C-D395C 0.0601926744722059 P328C-C333C 0.0582741099807187 G394C-V401C 0.0513809520601818 S336C-V401C 0.0463025688699252 W334C-G398C 0.0454918896101337 C333C-Q393C 0.0318393707824391 G339C-L400C 0.029463955535344 G394C-C402C 0.0173090005827952 C392C-G397C 0.0132891990726807 G337C-G397C -0.00186743831912267 V335C-P399C -0.0197964354395894 W338C-A391C -0.0229761535934934 G339C-P399C -0.0233697478915194 G394C-P399C -0.0265370456545346 W334C-S396C -0.0266410735742786 G330C-L400C -0.0343306429899135 P328C-C402C -0.0363952696523231 G330C-V335C -0.0417414996216463 W338C-C392C -0.0465949672507544 P328C-W334C -0.0514838289345156 C333C-P399C -0.0524717055043033 C392C-L400C -0.0564506625140213 S336C-D395C -0.0587148098438195 S336C-A391C -0.0592034166720952 S396C-V401C -0.062705461871102 W338C-D395C -0.0651050574548093 S336C-S396C -0.0736475240866517 C333C-G394C -0.0766209420533913 W334C-G339C -0.0784388379087124 G339C-G398C -0.0814183318187345 W338C-G394C -0.0944395226485319 W334C-Q393C -0.0944419093317428 W338C-Q393C -0.0989718893485945 V335C-D395C -0.103226625658469 G339C-C392C -0.11292679965084 V335C-G397C -0.113204668447721 G339C-G394C -0.121676810175256 G339C-A391C -0.128815100987214 K329C-L400C -0.130943205900426 V335C-H340C -0.145534121297065 S336C-G397C -0.149983233760725 P328C-L400C -0.156995820219268 W338C-G398C -0.157384005110059 H340C-S396C -0.170767035533623 G339C-Q393C -0.172903815511107 G337C-L400C -0.175635561104075 H340C-G394C -0.178930121291687 V335C-C392C -0.199769593155697 W334C-G397C -0.201825667351742 W338C-S396C -0.205850631218209 K329C-V401C -0.210762142397324 W334C-G394C -0.230721562597445 G337C-G398C -0.237788426920406 V335C-C402C -0.242460082591129 G337C-S396C -0.250198817663356 K329C-C402C -0.252970389297714 R332C-L400C -0.254221384179699 S331C-V401C -0.258213487660125 C392C-P399C -0.263678960023787 G339C-S396C -0.265662127772441 Q393C-G398C -0.269138062695055 D395C-L400C -0.304438655239052 W334C-P399C -0.30969226370595 V335C-S396C -0.327030633855104 G394C-L400C -0.332973042863355 Q393C-L400C -0.336779402811528 V335C-G394C -0.34531193630176 H340C-C392C -0.367727048719736 Q393C-P399C -0.436731267047389 S336C-G394C -0.605296260686537 S336C-P399C -0.612134412634204 G337C-G394C -0.934801197017805