[Fri Aug 26 17:15:58 2016] >Input file: TMF6X058M1D.pdb >TM segments: 372-377_ 380-387 MAIDEN score = 9.0812 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V374 -I385 1.16843038774329 L373 -I387 1.16484000510682 L373 -I385 1.10563909652093 P372 -I387 1.04993396434906 V375 -I385 1.01906385928988 V374 -W382 0.97896455948904 L373 -L384 0.893187081002207 P372 -L384 0.755789170602747 V374 -L384 0.75079896278778 V375 -W382 0.689033894344132 V375 -L384 0.656898718565389 P372 -I385 0.390595619215911 P372 -W382 0.354014003708119 D377 -Y383 0.31148707687592 D377 -W382 0.230325231349011 Q376 -G386 0.207450837980747 Q376 -W382 0.15021592577184 Q376 -L384 0.141064800762666 V374 -G386 0.121883037222828 V375 -G386 0.0780464252105881 L373 -Y383 0.0382038807706131 D377 -I385 0.0265087731528393 Q376 -I385 0.0180055261635221 D377 -G386 -0.00208605035098652 P372 -T381 -0.0117143445813097 P372 -G386 -0.0282014439607252 D380 -I385 -0.0381373777675826 D377 -L384 -0.0383305995686527 L373 -G386 -0.0425242932982923 V375 -T381 -0.0568486359539131 V374 -D380 -0.0713203501454283 L373 -T381 -0.0884619737355772 V375 -I387 -0.105995712921647 W382 -I387 -0.163437861938586 V374 -T381 -0.188526851404597 Q376 -T381 -0.188896866555854 P372 -Y383 -0.199547419837953 V375 -D380 -0.288998909592875 Q376 -Y383 -0.321768621826069 V374 -Y383 -0.333860422034512 V375 -Y383 -0.338474976517402 L373 -W382 -0.340559129054634 V374 -I387 -0.371465455211258