[Fri Aug 26 17:44:29 2016] >Input file: TMF8JRE5M1D.pdb >TM segments: 45-79 MAIDEN score = -4.1289 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- R47 -A56 1.05116964458858 I53 -Q58 0.798313968500809 H50 -Q58 0.664070392745533 H50 -V60 0.524764142484599 H50 -A55 0.462488389170302 R47 -I53 0.459118842370523 S48 -A54 0.417876968944582 V51 -A56 0.415687688481568 T52 -Q58 0.39376519541648 L49 -G57 0.363632814746827 L49 -A54 0.295997891288539 A55 -V60 0.291634801913215 L49 -A55 0.236446542362033 A56 -S61 0.2255327201641 V60 -Y67 0.219397266321607 V51 -Q58 0.202327323992895 H50 -V62 0.195389678318918 H50 -S64 0.193047543921135 I45 -T52 0.185606667168745 I53 -V60 0.177685083594129 S61 -Y67 0.165374544352447 A54 -V62 0.158902572821082 I45 -A55 0.156343305939127 R47 -G57 0.142376133078104 S61 -A68 0.124891682016846 L49 -S61 0.115850658683219 L49 -V60 0.115692476214262 R47 -Q58 0.112769709657344 G57 -A66 0.104892999186129 L59 -A66 0.10184734974003 R47 -A55 0.0998529946413687 S48 -A55 0.0935467021974361 V51 -V62 0.0858274091004638 Y67 -V73 0.085716857209133 S46 -V51 0.0779139106491127 I45 -V60 0.0751893507170018 S48 -L59 0.0747042983670623 T52 -F63 0.0646706847928034 R47 -V60 0.0599223024785196 G57 -I65 0.0552401897700339 I53 -S61 0.0511857912360337 A66 -V73 0.0508828104947217 I65 -S71 0.0493565519737444 I45 -G57 0.0487691112134763 H50 -F63 0.034475058757554 S46 -A54 0.02529825508927 S48 -A56 0.0220133345821782 I45 -Q58 0.0175995022424313 I65 -P72 0.0122830303573345 S64 -S71 0.0116314909425523 A55 -V62 0.00728447596016246 F63 -S71 0.00646886208850694 L49 -A56 0.00563768807202347 I53 -V62 0.00495343399420989 S48 -S61 0.00309052920136754 V62 -A68 -0.000317939242145959 V51 -L59 -0.000509722465942275 L59 -S64 -0.00187494513268049 Q58 -I65 -0.0108236605838128 V62 -S71 -0.0196952271777402 S46 -Q58 -0.0225332790220841 L74 -G79 -0.0255517121060924 A55 -F63 -0.0275419623951252 Q58 -A66 -0.0332881929420195 V51 -S64 -0.0385955121699841 T52 -S64 -0.0415074510772685 A55 -S64 -0.0516740074442428 R47 -S61 -0.0543684695753897 S61 -A66 -0.0609760306819283 Y67 -P72 -0.0612852356023985 T52 -V62 -0.0619206933895065 A56 -F63 -0.0684549807668761 A68 -V73 -0.0691536187332593 R47 -T52 -0.0692278377188731 L59 -Y67 -0.069357946176277 H50 -L59 -0.0705834970708519 F63 -P72 -0.0707798928115553 Q58 -S64 -0.0710821171276981 L49 -V62 -0.0784359999338529 Y67 -L74 -0.0851077399648688 F63 -L69 -0.0858638058313961 I65 -L70 -0.089956530295451 S46 -V60 -0.0931863076251482 A56 -S64 -0.0936121071145717 S46 -L59 -0.0938872505316821 L49 -S64 -0.0953876572566559 A56 -I65 -0.102237110695831 A54 -S61 -0.10353380530232 T52 -L59 -0.106302525312808 R47 -L59 -0.119995048849128 F63 -L70 -0.120043856898413 L49 -F63 -0.123172983793196 F63 -A68 -0.126042118752235 S46 -A56 -0.127364506070698 S46 -I53 -0.132515874718864 I45 -H50 -0.134239241062757 S46 -G57 -0.139918811799038 A68 -L74 -0.142811037185155 G57 -S64 -0.14776537898957 G57 -F63 -0.148537493170297 S48 -Q58 -0.151902615909145 L59 -I65 -0.152835064533676 L69 -L74 -0.156636445949101 A54 -F63 -0.160439430202134 I45 -I53 -0.163522029056772 H50 -A56 -0.164647376448548 L70 -A75 -0.166210929142588 S64 -P72 -0.168161418668777 A66 -P72 -0.173028270348947 L49 -L59 -0.189047115950415 A55 -S61 -0.193674518748432 S46 -A55 -0.19659580665779 S46 -T52 -0.215207298859534 G57 -V62 -0.226373855149145 T52 -S61 -0.232396036572166 L49 -Q58 -0.233588765190402 I45 -A56 -0.237776604961667 S48 -I53 -0.23792870383065 A54 -L59 -0.253493155039716 T52 -V60 -0.255240039374599 I45 -A54 -0.255528015234016 S48 -G57 -0.2609817300011 T52 -G57 -0.263730101379084 V51 -S61 -0.270377222223322 V60 -A66 -0.274254298365361 A54 -V60 -0.316172751642302 S48 -V60 -0.325856838309774 A56 -V62 -0.32809724226703 H50 -S61 -0.330646018430756 V51 -G57 -0.331137692689669 I53 -L59 -0.335398432737717 V62 -Y67 -0.348713030844482 V51 -V60 -0.350581185046538 I45 -V51 -0.358954061137226 Q58 -F63 -0.433303377985852 V60 -I65 -0.459258976231049 R47 -A54 -0.545078596459599 A66 -S71 -0.549000348319846 H50 -G57 -0.568488291013955