[Fri Aug 26 18:06:18 2016] >Input file: TMF8M624M1D.pdb >TM segments: 24-52_ 63-82 MAIDEN score = -6.1154 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- P27 -P32 0.753261045792553 W35 -A68 0.652463987470402 S28 -V77 0.470491800658095 A31 -V73 0.462676222791953 A24 -V77 0.406244292709749 S28 -H78 0.392095242749074 S28 -V76 0.383857570836389 A31 -A69 0.358062794265312 A39 -A67 0.347225173952451 H25 -Q30 0.343383913442083 A67 -A72 0.321564527281636 S38 -A67 0.320557723682425 P32 -S40 0.294540166395535 S28 -G80 0.293466992277346 P46 -P63 0.266803301201111 V47 -V52 0.252411117940905 P32 -V73 0.236409302941105 V77 -V82 0.236331163704826 H25 -H78 0.226094121243007 R26 -M34 0.222817421690391 A24 -A31 0.215361194622643 S29 -V77 0.208959787826499 V73 -G80 0.206623185994157 R26 -V77 0.199926350441095 H25 -P32 0.197653408576421 S29 -L37 0.175434729774782 A36 -A69 0.173211452770184 S29 -V76 0.17084525018576 W35 -T71 0.167518654770007 M34 -G42 0.167027221433671 A31 -S38 0.163452428190935 S38 -P63 0.162550620925464 G42 -Q50 0.160598273285554 S38 -P46 0.1599095246196 W43 -L65 0.158538242841733 A24 -I79 0.156568185466345 A74 -V82 0.152303065085719 H25 -V33 0.150924587052597 V33 -S38 0.147830909987826 A24 -H78 0.145800352923852 W35 -G42 0.14577367208939 M34 -A68 0.141582157729848 H25 -A74 0.138796586548458 P27 -W35 0.138687177697794 H64 -A72 0.135923562376575 S29 -S38 0.133633986207353 S40 -H64 0.132584547846226 S28 -V33 0.127079039938709 A31 -M75 0.126028483943559 A31 -A72 0.125026388589153 V33 -A68 0.124063749453895 A24 -A72 0.122997162167197 S40 -A67 0.120701370196087 H25 -V76 0.120519634285427 A69 -V76 0.119781300216739 W35 -H64 0.119439626884721 S28 -V73 0.118463860218766 L70 -V77 0.117163616650833 S28 -W35 0.117158939995654 G42 -A49 0.116940973963982 P32 -V77 0.115736074458938 S40 -A49 0.113651864703981 H25 -V73 0.110061478158058 R26 -V76 0.109192323053946 A31 -S40 0.109083572334094 P32 -M75 0.106322063444503 A69 -V77 0.104470282246876 A36 -L45 0.103236483371624 V33 -L41 0.103187264059193 V33 -L70 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