[Mon Aug 29 18:04:59 2016] >Input file: TMF8M6T3M1G.pdb >TM segments: 437-452_ 534-541_ 544-551 MAIDEN score = 0.0899 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L538 -D548 1.25852579094402 V537 -I551 1.01901269301195 V540 -E547 0.665054832188451 V537 -E547 0.642185774453439 F539 -V546 0.62689778323736 V540 -V546 0.625087771882954 F539 -V545 0.618609765385923 A534 -I551 0.505726362539012 L538 -V545 0.460644005531032 V540 -V545 0.454512323720192 A534 -S550 0.332291926182417 L538 -V546 0.309680358766004 R536 -E547 0.256906921017549 V537 -S550 0.213711665710179 D535 -I551 0.211246909800979 A442 -D449 0.202570331070225 R444 -E450 0.196596424695652 L538 -G549 0.184932908905637 R536 -I551 0.183798323238713 D535 -G549 0.150095835521808 Q438 -R447 0.14556768737392 A534 -D548 0.130351393072564 R536 -D548 0.129072257203471 Q438 -R444 0.118670545986733 F439 -R444 0.118052194215116 A442 -L451 0.115690048546529 R447 -I452 0.104958308728256 Q441 -A446 0.0964747330963416 D437 -V443 0.0929870738314742 A442 -E450 0.0786635175325845 V443 -L451 0.0755153780437601 Q441 -D449 0.0661512916413713 F539 -R544 0.06480384400923 R536 -V546 0.048454715198603 V537 -R544 0.04636468412115 V545 -I551 0.0456368514701762 R536 -V545 0.0345883035017468 V546 -I551 0.0305372466178957 V443 -I452 0.0268041857753403 F439 -L445 0.0224246667700339 D437 -A442 0.0187147445139142 V443 -E450 0.00274581505171234 D541 -G549 -0.00187596750374674 L445 -E450 -0.0106689613140301 F439 -V448 -0.0124077060850212 F539 -E547 -0.0159848978481336 A440 -V448 -0.0190114824651575 Q441 -E450 -0.0207321502143676 A442 -R447 -0.0250557727058411 A534 -E547 -0.0365104428194214 R444 -I452 -0.0403165184691829 A446 -L451 -0.0491650230185954 Q438 -V448 -0.0529813971521917 A534 -F539 -0.0548091588176947 R444 -D449 -0.0761178399757709 L445 -I452 -0.0761301419866702 Q438 -L445 -0.0787134451123768 D437 -L445 -0.0791819536670839 Q438 -A446 -0.0808979181258431 L538 -I551 -0.0821420146949974 R444 -L451 -0.0847104668700069 V540 -S550 -0.0872761639344743 D437 -V448 -0.0875706522929827 D437 -R447 -0.0980861186709197 F539 -S550 -0.100063825412267 F439 -A446 -0.10195690024818 V545 -S550 -0.108055293727345 D541 -E547 -0.111159451847355 V540 -I551 -0.114976283585193 V540 -D548 -0.120456302262085 R544 -G549 -0.124035146106698 F439 -D449 -0.124056655059119 Q441 -R447 -0.124445214355367 V540 -G549 -0.135057231046955 D535 -E547 -0.139303365421921 A440 -R447 -0.156858718997138 D437 -R444 -0.164612983170234 A440 -D449 -0.165301269452499 D535 -D548 -0.172719925551771 D541 -D548 -0.176308091252355 L538 -R544 -0.184147518038714 L538 -S550 -0.193429234251981 L445 -L451 -0.197730478454532 D535 -S550 -0.201577507203112 R536 -G549 -0.21637408618236 A440 -A446 -0.223619896234292 A534 -G549 -0.225577042308874 V537 -D548 -0.226478949202558 V443 -D449 -0.226803015739237 F439 -R447 -0.22863935396658 A446 -I452 -0.230646420190736 V443 -V448 -0.231840351792178 Q441 -V448 -0.234617161823401 F539 -I551 -0.242287664877697 F539 -G549 -0.245145540246568 A440 -L445 -0.249004036308754 L538 -E547 -0.295594353927594 V537 -V546 -0.31654773669849 V537 -V545 -0.346216288416794 A442 -V448 -0.355553297810953 Q438 -V443 -0.361099154172568 R536 -S550 -0.441264164969483 F539 -D548 -0.496230219243173 V537 -G549 -0.565475952391381 D541 -V546 -0.595828023835124