[Fri Aug 26 16:31:22 2016] >Input file: TMF8VTQ9S10D.pdb >TM segments: A832-846_A849-863 MAIDEN score = -0.7151 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- I836A-L853A 1.2202388627119 L840A-K845A 0.939024799630829 D837A-L853A 0.895332736273244 L840A-L853A 0.681249324827849 A839A-L853A 0.615021821684999 A832A-K857A 0.607827086273172 L840A-F854A 0.527393237055032 D837A-F854A 0.466562931252477 I836A-T856A 0.420325633528172 K845A-F854A 0.414248820544437 A839A-P844A 0.370186058281543 I836A-F854A 0.362068129515122 A832A-Q860A 0.348328262879159 K857A-E863A 0.333268895472986 E852A-Q860A 0.329730795844242 P844A-T856A 0.292385180378255 K845A-E852A 0.264675578603406 L840A-S851A 0.251542959726356 Q841A-K857A 0.225335959683435 F855A-E863A 0.207828034990147 A832A-D837A 0.201854383957506 K838A-P844A 0.191675569916212 A839A-S851A 0.191177310612594 D837A-L842A 0.187154869634832 L833A-K838A 0.1700688076128 L842A-S851A 0.168880986645118 K845A-T856A 0.166834245613204 A835A-F854A 0.166217708611429 D834A-T856A 0.164978160315931 A832A-G858A 0.151244193492057 K838A-T856A 0.145891329621455 K843A-L853A 0.145552694066787 P844A-G858A 0.140958999440427 K843A-T856A 0.134194375235757 P844A-E852A 0.126340293008887 I836A-I850A 0.124692428976322 L840A-E852A 0.123802777626201 Q841A-I850A 0.122080568609918 K838A-K845A 0.120008715484335 K843A-I850A 0.119558508485001 S851A-N859A 0.119538945253415 Q841A-S851A 0.117585773715117 S851A-Q860A 0.117557621553484 A835A-G858A 0.115927655424106 A835A-S851A 0.11502260318967 D834A-K843A 0.112483948483042 I836A-Q860A 0.110255019871342 A832A-R862A 0.107931732175356 E852A-R862A 0.104133019554465 K838A-E852A 0.102361881300578 A839A-T856A 0.0986785176951681 L840A-Q860A 0.0964230451440158 D846A-E852A 0.0879287341890647 L833A-Q841A 0.0869126636429103 D837A-K857A 0.0859209925047457 V849A-T856A 0.0845986177387568 K843A-K857A 0.0777339714232754 K838A-K857A 0.0757140657111144 L833A-R862A 0.0712655297682648 D837A-L861A 0.0710841387303915 I836A-S851A 0.0695127570529011 L833A-E852A 0.0694215414599801 Q841A-V849A 0.068013308934043 K845A-K857A 0.0677289808580586 D837A-G858A 0.0677152988011849 K838A-F854A 0.0668069532836753 L833A-G858A 0.0661345719486404 I850A-K857A 0.0636985224862059 A832A-A839A 0.0623761153774449 D837A-S851A 0.0575683551561286 P844A-F854A 0.054985229472261 L840A-V849A 0.0546150054551333 K843A-E852A 0.0537219933753557 L833A-L842A 0.0537005563759134 D846A-F855A 0.0487862445028857 A835A-L861A 0.0455752178780671 D846A-L853A 0.0451946109554764 L840A-K857A 0.0449393060329011 K838A-S851A 0.0438060785330152 D837A-E852A 0.0430568068623995 L833A-Q860A 0.0422607568812321 K845A-L853A 0.0405726726519768 Q841A-E852A 0.0387459253524782 K845A-I850A 0.032760757146403 K843A-F855A 0.0313361360237834 L833A-L861A 0.0313170182347164 V849A-F854A 0.0296150805465292 A835A-K843A 0.0276182368085811 P844A-F855A 0.0271912070648086 Q841A-T856A 0.0250703583269678 D834A-A839A 0.0243872969290391 A835A-L842A 0.0241686744873943 L842A-F854A 0.0210282515534197 L840A-F855A 0.0200057094176769 A835A-F855A 0.0187004526707364 L842A-E852A 0.018321650529824 L842A-V849A 0.0122641185774928 I836A-K845A 0.00782139209745703 A835A-Q860A 0.00622191748621814 K845A-G858A 0.00231135229537327 A835A-N859A 4.18020431673938e-05 D834A-L861A -0.002109004763724 V849A-F855A -0.0066180089997423 A832A-F854A -0.00727271224109138 I836A-N859A -0.00852056006560709 F854A-R862A -0.0109164738860715 S851A-T856A -0.012314430290703 A835A-K857A -0.0124861888503023 D837A-K845A -0.0125052058659683 L840A-G858A -0.013733502755759 A835A-P844A -0.0140261477537473 L833A-E863A -0.0169969518019988 A832A-Q841A -0.0190925327992599 A839A-V849A -0.0203816330344331 K843A-V849A -0.0224463328266111 D834A-F855A -0.0253225592830146 I850A-G858A -0.0261242154085064 Q841A-D846A -0.0370702289308382 A839A-I850A -0.0378313359287858 K845A-F855A -0.0383405446151492 D834A-L853A -0.038878394733258 L833A-S851A -0.0397153550846356 F854A-Q860A -0.0404718686668959 P844A-V849A -0.0429515004260175 A832A-E852A -0.045963630548383 D834A-Q860A -0.0462566064894263 L853A-R862A -0.0465792212128271 A835A-T856A -0.0472917154789023 I836A-L861A -0.0478540394604769 D837A-I850A -0.0481632709038584 I836A-E863A -0.0487888289378144 P844A-I850A -0.0496625729518287 L833A-K843A -0.051228915258418 F854A-L861A -0.0536473128612664 A832A-N859A -0.05514165187477 T856A-R862A -0.0558499094829918 D834A-L842A -0.0559322818309966 A832A-L840A -0.0560349195521757 D834A-P844A -0.0568780329230793 A835A-E852A -0.0582703765465302 D837A-Q860A -0.0588039157592111 S851A-K857A -0.0594806812568561 A839A-G858A -0.0603419146975453 A839A-D846A -0.0619205485410816 D834A-Q841A -0.065537346411917 L840A-N859A -0.0681714019289448 A832A-F855A -0.0697200195113847 L853A-N859A -0.0754111719343058 D834A-N859A -0.0771715768217529 Q841A-F854A -0.0790364671654284 F854A-N859A -0.0806827617956372 Q841A-F855A -0.0839323810074877 D846A-F854A -0.0846153044184925 I836A-E852A -0.0850449829294648 A832A-T856A -0.0855542816467464 P844A-K857A -0.0871908593678588 K843A-S851A -0.088664430853779 L833A-F855A -0.088964893670664 E852A-K857A -0.0910509805044653 A832A-E863A -0.0913279505576292 A839A-F855A -0.0926135895550884 D837A-F855A -0.0953345579231075 D834A-F854A -0.0983744423541282 I850A-F855A -0.0999511915723437 A839A-Q860A -0.101041097925925 P844A-S851A -0.101412758939309 A835A-L853A -0.101482722313785 L833A-P844A -0.101834621126006 D846A-S851A -0.1083269359265 D837A-P844A -0.108843397917929 L853A-E863A -0.110332176648552 E852A-G858A -0.117496537641817 L833A-K857A -0.118545917014034 L842A-K857A -0.119579121290811 T856A-E863A -0.120381133372489 D834A-G858A -0.120890230597648 S851A-G858A -0.122738953190654 A832A-K838A -0.123277028016429 L833A-N859A -0.126068755421321 I850A-T856A -0.128746254158279 K857A-R862A -0.133629406209043 L840A-T856A -0.138972112755383 I836A-Q841A -0.139617277595681 L833A-F854A -0.144907592812352 L833A-T856A -0.145299480614481 L833A-L853A -0.147309267100887 L842A-I850A -0.148135739595655 K838A-G858A -0.148337473458102 L840A-D846A -0.153454364230934 K838A-L853A -0.153659808665375 L842A-L853A -0.154874327202477 E852A-L861A -0.155364467913746 D837A-N859A -0.160778988126874 D834A-K857A -0.161699282177277 I836A-R862A -0.168114146168294 D837A-K843A -0.172404159092467 A832A-L853A -0.193553902416299 K843A-F854A -0.195187044769279 A835A-Q841A -0.198006838166685 F854A-E863A -0.198620432071833 T856A-L861A -0.20139409552479 L833A-L840A -0.207874570250259 D837A-T856A -0.212526486553207 A839A-E852A -0.221870980524877 K838A-Q860A -0.222606367762795 L853A-L861A -0.228142617763129 I836A-F855A -0.230364503527634 A839A-K857A -0.230622649334427 I836A-P844A -0.232929059679268 F855A-R862A -0.232998029611949 I836A-G858A -0.239895766867702 G858A-E863A -0.242332015277548 P844A-L853A -0.242653651648317 K838A-F855A -0.253077249222553 A839A-F854A -0.253138657472959 F855A-L861A -0.254121723778539 A835A-L840A -0.262766069994087 Q841A-L853A -0.263262686201372 D834A-L840A -0.267565332606199 E852A-N859A -0.285390595766973 I836A-K843A -0.295116221268082 L853A-Q860A -0.295920733493727 K845A-S851A -0.296433287404082 A839A-K845A -0.306154705087708 A832A-L861A -0.30780466402036 L833A-A839A -0.319739016785384 L840A-I850A -0.332001746270883 I836A-K857A -0.334597996026028 L853A-G858A -0.371952782732715 I836A-L842A -0.384843519696053 K838A-K843A -0.393148117459792 F855A-Q860A -0.414235999761983