[Fri Aug 26 16:38:11 2016] >Input file: TMF9PLY3M1D.pdb >TM segments: 362-368_ 376-403_ 436-448_ 489-525 MAIDEN score = 4.5318 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- G448 -Y490 10 L447 -Y490 1.76278517321975 Y385 -T396 1.3943231566659 L447 -I491 1.19443104857869 A383 -E400 0.800229242933247 L386 -T396 0.711882947549146 P440 -R505 0.669433994916359 P493 -R499 0.643164590451732 W381 -V398 0.576057867774098 L386 -V393 0.568752427478494 W381 -E400 0.549728553385905 H384 -Q395 0.538283648202098 H379 -V398 0.511973054841612 A383 -T396 0.492012749522114 P382 -E403 0.485573185262677 P493 -E516 0.458646710584231 L386 -Q395 0.446872018930868 P440 -K507 0.445407249899275 L447 -Q489 0.431975485678132 G448 -I491 0.394807821131714 N378 -A383 0.392263193108994 T492 -E516 0.36439472569719 P443 -N510 0.346398807794742 N438 -P443 0.345956238294573 R501 -N524 0.344966841041802 E444 -G506 0.341426286258257 D377 -V398 0.33238578490808 E400 -P440 0.329544441445799 H384 -H397 0.328792333560355 A383 -G402 0.30907135391402 Y385 -R394 0.307851727335668 N378 -V398 0.299549681626454 T437 -P443 0.296069189908793 R505 -N510 0.295673568598211 P493 -T520 0.295365462097244 Y446 -Y490 0.289733161248826 W381 -T396 0.284394515113306 Y446 -V509 0.283936917262086 R441 -N510 0.279375491869816 A387 -Q395 0.269674378027722 E403 -N438 0.269201037692206 Q395 -E403 0.265440764447668 Y380 -G401 0.264949639685264 D377 -H384 0.264325062949068 W381 -G401 0.259255075662613 H379 -E444 0.251754898987858 Y380 -P443 0.250502648394984 T396 -E403 0.244348227646284 Y446 -Q489 0.232063123610427 E444 -Q508 0.230725895085948 G399 -N438 0.230370912073388 D377 -V393 0.230016400669793 K497 -D518 0.228455469573213 P493 -L519 0.228189163300235 Q395 -G402 0.227633299415223 P443 -L511 0.225037209930661 G436 -G506 0.217093357887876 P382 -V398 0.214142199878499 Y490 -G515 0.210330517330593 N438 -E444 0.204108300753943 T396 -G401 0.20396372774436 G436 -Q508 0.203103775967501 T494 -G515 0.198072113391322 T445 -G506 0.189833420273502 F376 -N392 0.185830094058528 E444 -Y490 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