[Mon Aug 29 17:13:05 2016] >Input file: TMG1LGC3M1G.pdb >TM segments: 197-220_ 301-316_ 403-411 MAIDEN score = 7.7822 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Q209 -H214 10 W204 -L220 1.18038208505654 M208 -H214 0.987579274695577 M208 -L215 0.817179886013921 M208 -A218 0.626342983966383 A206 -L220 0.612845868500564 A197 -W202 0.599074291536724 M302 -T410 0.482953343801275 S207 -L215 0.459059669729197 C216 -W315 0.451484215691595 W204 -A218 0.445851699436439 W210 -L215 0.404457424478363 Q205 -G314 0.380140412127699 C216 -V312 0.30587919192221 G217 -W315 0.283530090150473 M208 -G217 0.252330918533912 Q209 -G316 0.248208749035842 M302 -R408 0.247981984515708 G217 -Y406 0.233889853267183 W204 -G314 0.233777041888137 K301 -T410 0.220569652238177 L198 -T313 0.214344176692921 S219 -V312 0.20849702854107 Q205 -G316 0.190719437095487 M208 -C216 0.188543649579923 Q205 -C216 0.187514154493996 K301 -E306 0.186327222415179 S207 -C216 0.184451117117182 Q209 -G314 0.178852868121246 S305 -V310 0.176521513319262 W204 -S219 0.173774503747434 T313 -T407 0.172541395225071 C216 -T313 0.16392962412267 S219 -V409 0.161746865455056 E306 -R408 0.159707177141087 A218 -V409 0.158325511016702 L215 -W315 0.152574730863052 L304 -T410 0.151934414552655 A206 -V312 0.15137451341381 Q213 -G316 0.15048985031531 L198 -W204 0.145258460986058 K301 -A411 0.137278940626492 W210 -G217 0.135572672613995 G200 -T313 0.135351933875838 L304 -Y406 0.132885809050415 Y406 -A411 0.132633203542603 W204 -W315 0.132491684413676 A218 -Y406 0.1316940297584 V199 -A206 0.129860897645444 W202 -S207 0.128311718759854 Q205 -H214 0.126920573163446 V310 -P403 0.123965408159386 G316 -Y406 0.121885931912781 A197 -G217 0.121109247101345 S305 -T410 0.116794611574395 P203 -V312 0.114086129965117 V310 -V405 0.11283476306592 K303 -S309 0.109534940853598 A201 -S219 0.109138950508024 T313 -G404 0.108941208013752 Q209 -L215 0.107658450422242 Q205 -T313 0.106701003548487 A201 -S207 0.103666414463972 P203 -A218 0.103622243048942 V311 -V409 0.103070696670404 C216 -Y406 0.100150716885324 H214 -W315 0.0996089062395349 A201 -A206 0.0982561175396377 L220 -V409 0.0979863350951493 L304 -V311 0.0970881589504202 S305 -A411 0.0954744994360046 S219 -T407 0.093287765521457 V199 -G314 0.0926095449961342 A201 -V311 0.0915660565175688 A197 -A206 0.089645826218764 N307 -T410 0.0878834448054349 Q213 -G314 0.0784902819919413 A197 -V311 0.0780708708378515 L198 -W315 0.0773384518570914 W202 -G217 0.0749764264521806 L304 -A411 0.0713514619443774 P203 -V311 0.0681478671952238 A308 -P403 0.0644576041535787 V311 -T407 0.0636702732162178 V405 -T410 0.0626555535358815 A218 -T407 0.061701406370485 M208 -G316 0.0595799191533946 P203 -S219 0.0568457320817082 A218 -V311 0.0566430281097627 V312 -P403 0.0550535159841221 A206 -G316 0.0548542843007622 G200 -G314 0.0526510847812953 V310 -R408 0.0494972492428503 S207 -W315 0.0492129277872477 G314 -G404 0.0488400286560045 G200 -V311 0.0487396820248001 Q205 -G217 0.0462043602753504 Q209 -S219 0.0461568115107527 A197 -Q205 0.0440621983185683 M208 -T313 0.0434965995114737 A218 -V312 0.0377344257910979 A218 -G316 0.0363439454072187 Q205 -L220 0.0358076157409815 G200 -S219 0.0342725656934135 W210 -G316 0.0335159473447135 A201 -L220 0.0324657311360665 G212 -W315 0.0320864717539384 S207 -G212 0.0318800556958265 W204 -C216 0.0318792030590505 K303 -V409 0.0317000544038067 L220 -T313 0.0311867801229502 W210 -W315 0.0306703198185692 A206 -L215 0.0285759588750434 A197 -G316 0.0270108431478615 V405 -A411 0.0269647473824293 V312 -T407 0.0268085450623274 W202 -A218 0.0250576193462377 A197 -V312 0.0236958470378541 S207 -T313 0.0228113954156299 L304 -V405 0.0218141798794544 V199 -T313 0.0216245247464117 S309 -P403 0.021002998586793 G316 -G404 0.0205390347079877 V199 -W204 0.0203003097228596 L198 -G314 0.0195594358211846 S219 -V311 0.0191736005854808 Q213 -W315 0.0185440064468646 K303 -T407 0.0168678267884994 M208 -L220 0.0160664363871259 V311 -V405 0.015745409232232 Q209 -W315 0.0128484674149624 Q209 -A218 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-0.0824208948228033 A201 -W315 -0.0850534079058431 K301 -R408 -0.0877352049995865 P203 -T313 -0.0882909391400208 V312 -V405 -0.0916671625247849 S219 -Y406 -0.09167445414794 K301 -N307 -0.0940256580617297 L215 -T313 -0.0940650857598998 G217 -V311 -0.0989051567326573 G217 -V312 -0.0998891170544152 Q205 -W315 -0.10225158472072 W202 -V310 -0.10265543955898 W204 -V311 -0.103776427888012 N307 -V409 -0.103933741151271 L198 -V312 -0.104975261975818 A201 -T313 -0.105975830542869 W202 -W315 -0.108034877050089 W204 -V312 -0.108881352898203 A206 -A218 -0.109246127078301 Q209 -C216 -0.109810021912575 S207 -V312 -0.109967730871351 K303 -V310 -0.111689845592335 A206 -S219 -0.112146116425304 W202 -S219 -0.112853582168132 W204 -V409 -0.117334135212161 L198 -Q205 -0.120395626701662 C216 -G316 -0.121523971165434 A206 -W315 -0.121920061048051 W210 -A218 -0.122490641554824 H214 -G314 -0.128346547634242 H214 -T313 -0.131008100298509 V312 -G404 -0.135181731258191 V310 -T407 -0.137619575577312 T313 -V405 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