[Fri Aug 26 17:18:10 2016] >Input file: TMG3HII2M1D.pdb >TM segments: 562-574_ 579-591_ 596-608 MAIDEN score = -6.1405 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- L574 -P579 1.90009545676207 I567 -L599 1.19169128400149 K563 -L590 0.976843421768281 R569 -A582 0.88496138038818 L573 -P579 0.768250704668065 D598 -L603 0.65899248054269 L590 -L599 0.65855632051007 L574 -K581 0.594749005441821 L590 -W600 0.586221203081308 A589 -L599 0.54359458354399 K563 -K588 0.537166201239799 L574 -V606 0.525876677247589 I567 -K588 0.520976225700673 Y586 -L599 0.499400526617109 G570 -K583 0.488045187866429 E571 -A582 0.472699611531559 L580 -Y607 0.448127920913149 R569 -L574 0.447380895418579 P579 -V606 0.434469304291637 Y586 -L603 0.421485436142114 L590 -N596 0.400605643675196 L574 -K583 0.387655958737295 G570 -K581 0.384603286903111 Y586 -W600 0.350947993140309 L580 -V606 0.344421141793319 K563 -A597 0.342947148122641 E571 -K583 0.332367327045352 G570 -A604 0.323704517643725 R569 -K583 0.320955866342512 A582 -V606 0.319263704678374 Y586 -N602 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