[Fri Aug 26 17:18:49 2016] >Input file: TMG3IGP1M1D.pdb >TM segments: 80-108_ 120-130_ 134-140 MAIDEN score = 12.8981 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- Q89 -H94 10 L100 -L106 4.5342268225599 I101 -I107 1.19111137532126 W84 -L100 1.17546999751271 I101 -L106 1.11614045461501 L100 -I107 0.962136195626176 L88 -V124 0.960542173579817 W84 -F126 0.887763472158965 W84 -I101 0.84398022990633 L100 -W105 0.797175911110544 W122 -I139 0.760672025796869 L88 -W122 0.724237286597854 L128 -Q134 0.715161184365183 N91 -K123 0.692776096105754 L88 -C96 0.671831471495349 L88 -A98 0.649316076009836 A86 -L100 0.640758664782695 A98 -T108 0.613912694879389 K123 -I139 0.58577581749463 L88 -H94 0.582145195113459 D121 -T138 0.564551993915618 S125 -R137 0.510932660314079 N91 -W122 0.48884562288674 W84 -T99 0.488629737515739 F126 -Q136 0.444844610041818 W84 -A98 0.425837858040074 T99 -I107 0.4202322421262 Q90 -D121 0.399103318941213 Q85 -G127 0.378479548239837 V124 -T138 0.372802816337576 C96 -K120 0.360866068751676 T99 -L106 0.352707418331198 S87 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