[Fri Aug 26 17:32:11 2016] >Input file: TMG5B2T5M1D.pdb >TM segments: 335-388_ 446-461 MAIDEN score = 10.7255 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V354 -P379 8.03906065654223 C355 -V378 1.82749005601916 V354 -V378 1.24403914956293 W356 -A377 1.08034560953913 W360 -L373 1.04436861751047 W356 -V378 1.03642105038453 W360 -V372 0.892467876169964 A362 -T369 0.845606833467693 V354 -L380 0.609826251952739 P343 -L457 0.545442826805021 C386 -K446 0.49161884236161 S345 -I453 0.463270515983925 S345 -F456 0.458641810563142 W360 -S370 0.458422040622033 P343 -I453 0.455417997542604 S352 -L380 0.429090655961554 T363 -T369 0.425724830539018 W360 -T369 0.425431286264444 C355 -R452 0.410649634434137 C386 -P447 0.4029625818474 G361 -S370 0.391040287695373 S370 -H375 0.387903656603709 S345 -T454 0.386637606969845 S455 -H461 0.385799764505368 I381 -P447 0.382022010103665 L342 -I453 0.373559687564622 A362 -D368 0.369086260498315 T363 -S370 0.368779640887821 C355 -P379 0.365748950183831 C341 -F456 0.360517558177614 L342 -T454 0.360071991983952 G359 -H375 0.339601757123042 T357 -T363 0.331358894970856 W356 -H375 0.323901696687893 S358 -L373 0.316479041274459 C341 -H461 0.315937368612685 T357 -V378 0.315332047013342 H388 -G448 0.308315573787436 C355 -V449 0.308289843059328 E347 -F456 0.307265056669351 T357 -T451 0.302277707520927 T357 -P447 0.296092084401752 I381 -C386 0.29059083754235 P343 -T451 0.277668057786048 K353 -P379 0.267645905500691 C355 -L380 0.267148170390835 T363 -D368 0.267039275675795 W360 -G367 0.258120910585114 C341 -E346 0.250904863371728 E335 -C341 0.250904863371728 H350 -P379 0.245878713093727 T357 -L380 0.230500679959148 S358 -P371 0.220435792719401 D365 -K446 0.219614461468248 P343 -H461 0.216960159838682 C386 -R452 0.213747080891789 N344 -L457 0.212138610077148 N387 -P447 0.208399359830912 P339 -S358 0.201799250468302 W360 -P371 0.199770327190753 P379 -Y450 0.197357449608322 T451 -L457 0.194006310049462 T357 -A362 0.190968055076314 F349 -Y450 0.188031615300535 C341 -L457 0.183128301257394 S348 -P379 0.182914885568144 K353 -I381 0.181276706069865 C341 -T454 0.180441682228099 M336 -L373 0.178424957794839 P343 -D351 0.177868775631537 V354 -H375 0.176606124384083 C341 -F349 0.176483662111159 P343 -S352 0.173806341779566 S382 -K446 0.172998483296305 N344 -D458 0.172429496489635 S358 -Y450 0.1697916757985 E346 -L457 0.167610759379821 S352 -N383 0.165066383209202 H388 -P447 0.164157448355528 I453 -H461 0.16188900301798 W360 -N374 0.161082045596006 H388 -V449 0.158502590742069 C341 -C355 0.157715252976524 I381 -H388 0.150940162658026 C341 -E347 0.149921497854834 S382 -G448 0.149242956618945 N344 -W459 0.142198850299548 V354 -V449 0.138566725723735 H350 -T454 0.137740710816077 S345 -H461 0.137047397713182 E346 -S455 0.130721108539531 C341 -I460 0.129881398587472 L380 -K446 0.127935612562272 G359 -E364 0.126959644603045 K384 -P447 0.12660132520482 C341 -R452 0.126578345915635 S382 -Y450 0.125915498767642 P343 -S348 0.125502845374803 G361 -Y450 0.125009158969402 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