[Mon Aug 29 16:42:23 2016] >Input file: TMH0TUC3M1G.pdb >TM segments: 109-116_ 262-275 MAIDEN score = 8.8050 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- A112 -A268 7.868703934819 H114 -R267 1.10220965812763 R113 -V266 0.895821784814246 A112 -R270 0.600976286993513 R270 -L275 0.431445811912365 A115 -A268 0.377720890340675 A112 -A272 0.333605533988978 G111 -R270 0.327742314932475 T110 -R270 0.327716826131945 G111 -E273 0.320958021784466 T110 -A268 0.295811589222554 A115 -G265 0.261928031014418 A115 -A264 0.254487628201069 G111 -G265 0.253405355055462 H114 -V266 0.230549557653216 A112 -S269 0.20477273594143 Y116 -A264 0.202963548066672 Y116 -A263 0.195395568746143 H114 -G265 0.174259440695687 H114 -S269 0.169192935863112 R113 -A272 0.156573493673432 T110 -W274 0.154606840421849 R113 -A264 0.150406075959349 G111 -A272 0.148105346846737 R113 -A263 0.122739986294871 H114 -W262 0.117960568543686 A115 -S269 0.105666790286799 A112 -E273 0.0932380635084105 T110 -R267 0.0908896062768667 Y116 -G265 0.0865234143260452 R267 -L275 0.0853270074047946 W262 -R267 0.0659192586281439 A268 -L275 0.0624957465740774 Y116 -V266 0.0528847452418633 A112 -A264 0.0523101967758299 A112 -V266 0.0513342825655174 A112 -A263 0.0499111690323613 H114 -A264 0.0416543232930778 H114 -A263 0.0415674876554225 G111 -R267 0.0287493984556897 R113 -R267 0.0248302901629236 A109 -A271 0.0163537806578558 R113 -R270 0.0114883208113232 H114 -W274 0.00874777913882041 S269 -L275 0.00595339292877206 A109 -S269 0.00141162788184634 G111 -L275 0.000170511731458434 H114 -A272 -0.0173661902532691 G111 -A271 -0.0205549056354384 V266 -A271 -0.022759644513231 T110 -L275 -0.0234870538338892 A112 -W274 -0.0254605463291857 T110 -V266 -0.0383590817019526 A115 -A271 -0.0394402837885988 R113 -G265 -0.0433588538120713 S269 -W274 -0.047203804934053 A109 -V266 -0.0526831051892822 R267 -W274 -0.0564554396546755 A112 -W262 -0.0568755745828715 H114 -A271 -0.0577389226412066 T110 -E273 -0.0662337841784635 G111 -V266 -0.0662642195005132 A263 -A268 -0.0720495825958998 R267 -A272 -0.0727159613293784 A115 -W262 -0.0738758559547699 R113 -W262 -0.083047237243616 Y116 -R267 -0.0843490346174192 A112 -L275 -0.091130870817933 Y116 -S269 -0.0921582419558686 T110 -A271 -0.0925161323902366 Y116 -A268 -0.10774995618809 Y116 -W262 -0.108111598451442 G111 -W274 -0.127818357456818 A109 -W274 -0.127964339229501 A115 -A263 -0.142803980147904 G111 -A268 -0.146729037527736 A115 -R267 -0.148014424105216 A115 -V266 -0.149345428637579 A268 -E273 -0.155000633903797 A109 -R267 -0.156470474549406 A109 -R270 -0.174976316810411 R267 -E273 -0.174998543357601 R113 -E273 -0.177168709623011 R113 -A271 -0.178603879129027 H114 -A268 -0.181558391357331 R113 -W274 -0.186587409792036 A115 -R270 -0.189614081052127 A109 -A272 -0.190029624529482 A109 -A268 -0.200113257515801 A112 -G265 -0.21850543518579 A112 -A271 -0.218844935142112 H114 -R270 -0.219137397589153 G111 -S269 -0.222945150323138 T110 -S269 -0.225782289837366 A268 -W274 -0.236568289295012 A109 -E273 -0.247275708962195 R113 -A268 -0.330936126582626 T110 -A272 -0.37512273084895 R113 -S269 -0.597057296355966 A112 -R267 -0.640557369092083