[Fri Aug 26 16:31:16 2016] >Input file: TMH0XR05M1D.pdb >TM segments: 249-258_ 298-310_ 399-408 MAIDEN score = -2.2790 Below is the ranking list of the residue pairs and their related pseudo-energy (the lower, the better). This includes inter-chain residue pairs. The maximum (least favorable) pairwise energy value has been set to 10. See the MAIDEN software article: Postic,G., Ghouzam,Y. and Gelly,J.C. (2015) Biochimie, 115, 155–161. ----------- ---------------- Calpha pair Empirical energy ----------- ---------------- V300 -Y402 0.356888209884928 L298 -T406 0.336802625332006 P301 -T406 0.293665425104474 S304 -P399 0.185420611343482 T309 -T403 0.172541395225071 P301 -R404 0.152768263142685 V306 -P399 0.124942815864818 T309 -G400 0.124694638690619 E299 -V405 0.103708977837984 Y402 -H407 0.0916594516298797 V306 -L401 0.0803502282394306 F307 -T403 0.0671918821917645 F307 -P399 0.0659320739645734 F307 -L401 0.0608286276908903 E299 -H407 0.0545026551142933 V306 -R404 0.0518197977019239 P301 -V306 0.0501363178909826 S249 -Q254 0.0487021720219341 G310 -G400 0.0440239084250225 K303 -T406 0.0439197301220708 V300 -F307 0.0359523473123675 V308 -P399 0.035767558885849 V308 -T403 0.0267931149961586 L298 -R404 0.0245747637212297 E299 -K305 0.0235865999008382 E299 -T406 0.0207393130183864 V300 -L401 0.0200712377791441 K305 -G400 0.0110509061018647 V300 -H407 0.00217299148295136 L401 -T406 0.00155030655941402 P302 -F307 -0.00416208612524216 V300 -T406 -0.00464827980844706 V300 -T403 -0.00791087495247877 E299 -R404 -0.0145915649745793 V308 -R404 -0.017112833747789 G310 -Y402 -0.0228259050673225 V308 -V405 -0.0259953744748898 K303 -V405 -0.0282069069002278 V306 -V405 -0.044311453720445 L298 -Y408 -0.0445420040052422 P399 -R404 -0.0456275471094942 F307 -G400 -0.0475764115581641 R253 -I258 -0.0476583771666279 T309 -Y402 -0.0509786014265428 L298 -V405 -0.0517161008745735 V306 -G400 -0.0569598960161022 V308 -L401 -0.0577071393245596 V300 -Y408 -0.06367513116792 P301 -V405 -0.0697935670504162 E299 -S304 -0.0700894346728569 K305 -L401 -0.073284601774994 T403 -Y408 -0.0794041889149852 V306 -Y402 -0.0842473265182428 T309 -L401 -0.093634139715375 L298 -K303 -0.105360798984147 K303 -R404 -0.110282103123923 L401 -H407 -0.111192761394832 K303 -V308 -0.1118351071462 E299 -Y408 -0.118558993038633 F307 -V405 -0.123358942164608 V308 -G400 -0.127281165947889 K305 -P399 -0.129733162739326 F307 -R404 -0.137612184950895 F307 -Y402 -0.139482379481965 V306 -T403 -0.139760665841858 K305 -Y402 -0.14505987705446 V300 -R404 -0.161489650346463 E299 -V306 -0.177886803519995 P302 -T406 -0.189680378801424 L298 -H407 -0.21444567767507 Y402 -Y408 -0.239672123607516 V300 -K305 -0.240811010442222 P301 -H407 -0.251049992436157 V300 -V405 -0.253835845994949 V308 -Y402 -0.303617919191458 V300 -V306 -0.353113449769446